myRT

myRT report for GCA_002700045.1_ASM270004v1

Download annotations/find similar RTs

Seq: PDUV01000173.1 Rhodobacteraceae bacterium 4F10 14_S14_L001_R1_001__paired__contig_173, whole genome shotgun sequence (7335 bp)
Overview 1 RT 1: 3315-6704 bp Neighborhood of RT #1 [3315, 7333] AmpC AmpC DUF3471 RVT-UG14 Feature: gene Location: 3315-4517 bp Feature: domain Description: AmpC Location: 3426-4431 bp Feature: domain Description: AmpC Location: 3426-4431 bp Feature: gene Location: 4718-6286 bp Feature: domain Description: AmpC Location: 4742-5813 bp Feature: domain Description: AmpC Location: 4742-581 3 bp Feature: domain Description: DUF3471 Location: 5981-6272 bp Feature: domain Description: DUF3471 Location: 5981 -6272 bp Feature: gene Location: 6353-7333 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 6356-6704 bp Feature: RT Description: RVT-UG1 4 Note: UG1 4 RT Location: 6356-6704 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AmpC (COG1680), DUF3471 (pfam11954), RVT-UG14

Seq: PDUV01000482.1 Rhodobacteraceae bacterium 4F10 14_S14_L001_R1_001__paired__contig_482, whole genome shotgun sequence (2758 bp)
Overview 1 RT 1: 586-2740 bp Neighborhood of RT #1 [586, 2757] RVT-UG14 Feature: gene Location: 586-1107 bp Feature: gene Location: 1273-1944 bp Feature: gene Location: 2119-2757 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 2581-2740 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 2 581-2 740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG14

Seq: PDUV01000511.1 Rhodobacteraceae bacterium 4F10 14_S14_L001_R1_001__paired__contig_511, whole genome shotgun sequence (2536 bp)
Overview 1 RT 1: 1-1626 bp Neighborhood of RT #1 [1, 2534] RVT-Retrons Zn_ribbon_recom Feature: gene Location: 1-363 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10-190 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10-190 bp Feature: gene Location: 743-949 bp Feature: gene Location: 1260-2534 bp Feature: domain Description: Zn_ribbon_recom Location: 1461-1626 bp Feature: domain Description: Zn_ribbon_recom Location: 1461-1626 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Zn_ribbon_recom (pfam13408)