myRT

myRT report for GCA_002706765.1_ASM270676v1

Download annotations/find similar RTs

Seq: PAJV01000027.1 Gimesia sp. isolate SAT87 304116, whole genome shotgun sequence (25117 bp)
Overview 1 RT 1: 2666-6049 bp Neighborhood of RT #1 [2666, 6063] TnpB_IS66 RVT-GII GIIM DDE_3 Feature: gene Location: 2666-3028 bp Feature: domain Description: TnpB_IS66 Location: 2693-2975 bp Feature: domain Description: TnpB_IS66 Location: 2693-2975 bp Feature: gene Location: 3028-3417 bp Feature: gene Location: 3686-5083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4022-4643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4022-4643 bp Feature: domain Description: GIIM Note: maturase Location: 4691-4913 bp Feature: domain Description: GIIM Note: maturase Location: 4691 -491 3 bp Feature: gene Location: 5095-5304 bp Feature: gene Location: 5752-6063 bp Feature: domain Description: DDE_3 Location: 5839-6049 bp Feature: domain Description: DDE_3 Location: 5839-6049 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, GIIM (pfam08388), DDE_3 (pfam13358)

Seq: PAJV01000030.1 Gimesia sp. isolate SAT87 MHASMcontig_1753190, whole genome shotgun sequence (13142 bp)
Overview 1 RT 1: 7643-11934 bp Neighborhood of RT #1 [7643, 11934] RVT-CRISPR-like Feature: gene Location: 7643-7783 bp Feature: gene Location: 7833-8144 bp Feature: gene Location: 8362-11148 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 10195-10837 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 10195-10837 bp Feature: gene Location: 11351-11509 bp Feature: gene Location: 11713-11934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: PAJV01000050.1 Gimesia sp. isolate SAT87 MHASMcontig_1757961, whole genome shotgun sequence (187466 bp)
Overview 1 RT 1: 57714-60569 bp Neighborhood of RT #1 [57714, 60569] HTH_XRE RVT-Retrons HpcH Feature: gene Location: 57714-57998 bp Feature: gene Location: 58108-58410 bp Feature: domain Description: HTH_XRE Location: 58114-58240 bp Feature: domain Description: HTH_XRE Location: 58114-58240 bp Feature: gene Location: 58382-59428 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 58514-59036 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 58514-5903 6 bp Feature: gene Location: 59612-60379 bp Feature: domain Description: HpcH Location: 59621-60368 bp Feature: domain Description: HpcH Location: 59621-603 68 bp Feature: gene Location: 60414-60569 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, HpcH (COG3836)

Seq: PAJV01000063.1 Gimesia sp. isolate SAT87 MHASMcontig_1761485, whole genome shotgun sequence (64234 bp)
Overview 1 RT 1: 11273-18737 bp Neighborhood of RT #1 [11273, 18805] MLE MR_MLE_C S2P-M50_SpoIVFB RVT-Retrons PRK07561 Feature: gene Location: 11273-12625 bp Feature: domain Description: MLE Location: 11321-11474 bp Feature: domain Description: MLE Location: 11321-114 74 bp Feature: domain Description: MR_MLE_C Location: 11948-12620 bp Feature: domain Description: MR_MLE_C Location: 1194 8-12620 bp Feature: gene Location: 12650-13345 bp Feature: domain Description: S2P-M50_SpoIVFB Location: 12722-13331 bp Feature: domain Description: S2P-M50_SpoIVFB Location: 12722-13331 bp Feature: gene Location: 13891-15165 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14323-14941 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14 323-14 94 1 bp Feature: gene Location: 15312-16079 bp Feature: gene Location: 16094-18805 bp Feature: domain Description: PRK07561 Location: 16115-18737 bp Feature: domain Description: PRK07561 Location: 16115-18737 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MLE (cd03318), MR_MLE_C (pfam13378), S2P-M50_SpoIVFB (cd06161), RVT-Retrons, PRK07561 (DNA topoisomerase I subunit omega; Validated)