myRT

myRT report for GCA_002714765.1_ASM271476v1

Download annotations/find similar RTs

Seq: PAYG01000004.1 Marinobacter sp. isolate SAT109 138127, whole genome shotgun sequence (57800 bp)
Overview 1 RT 1: 53534-57192 bp Neighborhood of RT #1 [53534, 57371] InsA RVT-GII GIIM Feature: gene Location: 53534-55366 bp Feature: domain Description: InsA Location: 53885-54188 bp Feature: domain Description: InsA Location: 53885-541 88 bp Feature: gene Location: 55748-55939 bp Feature: gene Location: 55980-57371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56304-56922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56304-56922 bp Feature: domain Description: GIIM Note: maturase Location: 56973-57192 bp Feature: domain Description: GIIM Note: maturase Location: 56973-571 92 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsA (COG3677), RVT-GII, GIIM (pfam08388)

Seq: PAYG01000014.1 Marinobacter sp. isolate SAT109 194808, whole genome shotgun sequence (91363 bp)
Overview 1 RT 1: 1-3797 bp Neighborhood of RT #1 [1, 3838] RVT-GII GIIM DsbA_HCCA_Iso DsbA_HCCA_Iso DsbA_HCCA_Iso TVP38 Feature: gene Location: 1-165 bp Feature: gene Location: 394-1785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 718-1336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 718-1336 bp Feature: domain Description: GIIM Note: maturase Location: 1387-1606 bp Feature: domain Description: GIIM Note: maturase Location: 1387-1606 bp Feature: gene Location: 2051-3148 bp Feature: domain Description: DsbA_HCCA_Iso Location: 2330-2558 bp Feature: domain Description: DsbA_HCCA_Iso Location: 2 330-2 558 bp Feature: domain Description: DsbA_HCCA_Iso Location: 2576-2675 bp Feature: domain Description: DsbA_HCCA_Iso Location: 2 576-2 675 bp Feature: domain Description: DsbA_HCCA_Iso Location: 2798-2912 bp Feature: domain Description: DsbA_HCCA_Iso Location: 2 798-2 912 bp Feature: gene Location: 3167-3838 bp Feature: domain Description: TVP38 Location: 3182-3797 bp Feature: domain Description: TVP38 Location: 3182 -3797 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DsbA_HCCA_Iso (cd03022), TVP38 (COG0398), RVT-GII, GIIM (pfam08388)

Seq: PAYG01000025.1 Marinobacter sp. isolate SAT109 244781, whole genome shotgun sequence (24768 bp)
Overview 1 RT 1: 20318-24754 bp Neighborhood of RT #1 [20318, 24765] PRK06185 RVT-GII GIIM IS285 Feature: gene Location: 20318-21643 bp Feature: domain Description: PRK06185 Location: 20429-21629 bp Feature: domain Description: PRK06185 Location: 20429-21629 bp Feature: gene Location: 21995-22186 bp Feature: gene Location: 22227-23618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22551-23169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22551-23 169 bp Feature: domain Description: GIIM Note: maturase Location: 23220-23439 bp Feature: domain Description: GIIM Note: maturase Location: 23 220-23 43 9 bp Feature: gene Location: 23728-24765 bp Feature: domain Description: IS285 Location: 23734-24754 bp Feature: domain Description: IS285 Location: 23 73 4-24754 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06185 (FAD-dependent oxidoreductase), RVT-GII, GIIM (pfam08388), IS285 (COG3328)

Seq: PAYG01000028.1 Marinobacter sp. isolate SAT109 282720, whole genome shotgun sequence (184797 bp)
Overview 1 RT 1: 133848-138693 bp 2 RT 2: 182433-184616 bp Neighborhood of RT #1 [133848, 138693] COG4584 PRK09183 RVT-GII GIIM Neighborhood of RT #2 [182433, 184795] DEDDh RVT-GII GIIM Feature: gene Location: 133848-134867 bp Feature: domain Description: COG4584 Location: 133851-134703 bp Feature: domain Description: COG4 584 Location: 133851-134 703 bp Feature: gene Location: 134864-135661 bp Feature: domain Description: PRK09183 Location: 134867-135620 bp Feature: domain Description: PRK09183 Location: 134 867-135620 bp Feature: gene Location: 135782-137173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136106-136724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136106-136724 bp Feature: domain Description: GIIM Note: maturase Location: 136775-136994 bp Feature: domain Description: GIIM Note: maturase Location: 136775-136994 bp Feature: gene Location: 137214-137405 bp Feature: gene Location: 137701-138693 bp Feature: gene Location: 182433-182999 bp Feature: domain Description: DEDDh Location: 182490-182931 bp Feature: domain Description: DEDDh Location: 1824 90-182931 bp Feature: gene Location: 183035-183274 bp Feature: gene Location: 183491-184795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183728-184346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183728-184 34 6 bp Feature: domain Description: GIIM Note: maturase Location: 184397-184616 bp Feature: domain Description: GIIM Note: maturase Location: 184 397-184 616 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), PRK09183 (transposase/IS protein; Provisional), RVT-GII, GIIM (pfam08388), DEDDh (cd06127)