myRT

myRT report for GCA_002720785.1_ASM272078v1

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Seq: PBIH01000019.1 Deltaproteobacteria bacterium isolate SP3005 MHASMcontig_3540370, whole genome shotgun sequence (128725 bp)
Overview 1 RT 1: 53497-65558 bp Neighborhood of RT #1 [53497, 65620] WD40 WD40 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 WGR_MMR_like RVT-Retrons SpoIID YdiL Feature: gene Location: 53497-59964 bp Feature: domain Description: WD40 Location: 53515-53899 bp Feature: domain Description: WD40 Location: 5351 5-53899 bp Feature: domain Description: WD40 Location: 53977-54472 bp Feature: domain Description: WD40 Location: 53977-54472 bp Feature: domain Description: HEAT_2 Location: 54604-54856 bp Feature: domain Description: HEAT_2 Location: 54604-54856 bp Feature: domain Description: HEAT_2 Location: 55339-55582 bp Feature: domain Description: HEAT_2 Location: 55339-55582 bp Feature: domain Description: HEAT_2 Location: 56026-56152 bp Feature: domain Description: HEAT_2 Location: 56026-561 52 bp Feature: domain Description: HEAT_2 Location: 56485-56647 bp Feature: domain Description: HEAT_2 Location: 56485-56647 bp Feature: domain Description: HEAT Location: 57340-57424 bp Feature: domain Description: HEAT Location: 57340-57424 bp Feature: domain Description: HEAT_2 Location: 57478-57676 bp Feature: domain Description: HEAT_2 Location: 57478-57676 bp Feature: domain Description: HEAT_2 Location: 57724-57940 bp Feature: domain Description: HEAT_2 Location: 57724-57940 bp Feature: domain Description: HEAT_2 Location: 58006-58267 bp Feature: domain Description: HEAT_2 Location: 58006-58267 bp Feature: domain Description: HEAT_2 Location: 58306-58570 bp Feature: domain Description: HEAT_2 Location: 58306-58570 bp Feature: domain Description: HEAT_2 Location: 58627-58870 bp Feature: domain Description: HEAT_2 Location: 58627-58870 bp Feature: domain Description: HEAT_2 Location: 59134-59296 bp Feature: domain Description: HEAT_2 Location: 591 34-59296 bp Feature: domain Description: HEAT_2 Location: 59410-59593 bp Feature: domain Description: HEAT_2 Location: 5941 0-59593 bp Feature: gene Location: 59980-61827 bp Feature: domain Description: WGR_MMR_like Location: 61666-61810 bp Feature: domain Description: WGR_MMR_like Location: 61 666-61 81 0 bp Feature: gene Location: 61863-63203 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 62337-62955 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 62337-62955 bp Feature: gene Location: 63324-64979 bp Feature: domain Description: SpoIID Location: 63948-64965 bp Feature: domain Description: SpoIID Location: 63948-64965 bp Feature: gene Location: 64982-65620 bp Feature: domain Description: YdiL Location: 65024-65558 bp Feature: domain Description: YdiL Location: 65024-65558 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WD40 (smart00320), HEAT_2 (pfam13646), HEAT (sd00044), WGR_MMR_like (cd07996), RVT-Retrons, SpoIID (pfam08486), YdiL (COG1266)

Seq: PBIH01000057.1 Deltaproteobacteria bacterium isolate SP3005 MHASMcontig_3699491, whole genome shotgun sequence (46883 bp)
Overview 1 RT 1: 114-5605 bp Neighborhood of RT #1 [114, 5605] YfmG RVT-Retrons HEAT_2 HEAT_2 Aldo_ket_red Feature: gene Location: 114-1064 bp Feature: domain Description: YfmG Location: 321-831 bp Feature: domain Description: YfmG Location: 32 1-831 bp Feature: gene Location: 1057-2622 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1726-2350 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 172 6-2 350 bp Feature: gene Location: 2767-5196 bp Feature: domain Description: HEAT_2 Location: 2863-3109 bp Feature: domain Description: HEAT_2 Location: 2 863-3109 bp Feature: domain Description: HEAT_2 Location: 3391-3604 bp Feature: domain Description: HEAT_2 Location: 3391-3604 bp Feature: domain Description: Aldo_ket_red Location: 4405-5137 bp Feature: domain Description: Aldo_ket_red Location: 4405-5137 bp Feature: gene Location: 5324-5605 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, YfmG (COG1262), HEAT_2 (pfam13646), Aldo_ket_red (pfam00248)

Seq: PBIH01000081.1 Deltaproteobacteria bacterium isolate SP3005 MHASMcontig_3744966, whole genome shotgun sequence (132598 bp)
Overview 1 RT 1: 61019-68186 bp Neighborhood of RT #1 [61019, 72646] PleD PRK10060 BaeS RVT-Retrons SWIM HEAT_2 Feature: gene Location: 61019-63124 bp Feature: domain Description: PleD Location: 61046-61448 bp Feature: domain Description: PleD Location: 61046-61448 bp Feature: domain Description: PRK10060 Location: 61733-63095 bp Feature: domain Description: PRK10060 Location: 6173 3 -63 095 bp Feature: gene Location: 63229-64755 bp Feature: domain Description: BaeS Location: 63976-64693 bp Feature: domain Description: BaeS Location: 63 976-64693 bp Feature: gene Location: 64959-66368 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 65520-66129 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 65520-66129 bp Feature: gene Location: 66379-68013 bp Feature: domain Description: SWIM Location: 67906-67987 bp Feature: domain Description: SWIM Location: 67906-67987 bp Feature: gene Location: 68003-72646 bp Feature: domain Description: HEAT_2 Location: 68033-68186 bp Feature: domain Description: HEAT_2 Location: 6803 3 -68186 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PleD (COG3706), PRK10060 (cyclic di-GMP phosphodiesterase), BaeS (COG0642), RVT-Retrons, SWIM (pfam04434), HEAT_2 (pfam13646)

Seq: PBIH01000091.1 Deltaproteobacteria bacterium isolate SP3005 MHASMcontig_3761075, whole genome shotgun sequence (227254 bp)
Overview 1 RT 1: 98948-107288 bp Neighborhood of RT #1 [98948, 107296] OmpR ligand_gated_channel ligand_gated_channel RVT-Retrons RVT-Retrons OEP OEP PRK05437 Feature: gene Location: 98948-99673 bp Feature: domain Description: OmpR Location: 98969-99653 bp Feature: domain Description: OmpR Location: 98969-99653 bp Feature: gene Location: 99679-101970 bp Feature: domain Description: ligand_gated_channel Location: 100165-100720 bp Feature: domain Description: ligand_gated_channel Location: 100165-100720 bp Feature: domain Description: ligand_gated_channel Location: 101182-101920 bp Feature: domain Description: ligand_gated_channel Location: 101182-101920 bp Feature: gene Location: 102177-104330 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 102387-103008 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 102387-103008 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 103431-104028 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1034 31-104 028 bp Feature: gene Location: 104378-106009 bp Feature: domain Description: OEP Location: 104558-105302 bp Feature: domain Description: OEP Location: 104 558-105302 bp Feature: domain Description: OEP Location: 105377-105926 bp Feature: domain Description: OEP Location: 105377-105926 bp Feature: gene Location: 106190-107296 bp Feature: domain Description: PRK05437 Location: 106274-107288 bp Feature: domain Description: PRK054 37 Location: 106274 -107288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, OEP (pfam02321), PRK05437 (isopentenyl pyrophosphate isomerase; Provisional), OmpR (COG0745), ligand_gated_channel (cd01347)