myRT

myRT report for GCA_002720945.1_ASM272094v1

Download annotations/find similar RTs

Seq: PBIS01000058.1 Sandaracinus sp. isolate SP2993 153187, whole genome shotgun sequence (69016 bp)
Overview 1 RT 1: 34428-42756 bp Neighborhood of RT #1 [34428, 42764] SWIM RVT-Retrons DUF676 COG3564 Feature: gene Location: 34428-37040 bp Feature: gene Location: 37037-38710 bp Feature: domain Description: SWIM Location: 38594-38672 bp Feature: domain Description: SWIM Location: 38594-38672 bp Feature: gene Location: 39357-40745 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39903-40518 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39903-4051 8 bp Feature: gene Location: 41077-42063 bp Feature: domain Description: DUF676 Location: 41296-41617 bp Feature: domain Description: DUF676 Location: 41 296-41 61 7 bp Feature: gene Location: 42327-42764 bp Feature: domain Description: COG3564 Location: 42438-42756 bp Feature: domain Description: COG3564 Location: 42438-42756 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SWIM (pfam04434), RVT-Retrons, DUF676 (pfam05057), COG3564 (Uncharacterized conserved protein, DUF779 family )

Seq: PBIS01000177.1 Sandaracinus sp. isolate SP2993 MHASMcontig_2851212, whole genome shotgun sequence (21372 bp)
Overview 1 RT 1: 236-12307 bp Neighborhood of RT #1 [236, 12345] PEGA RVT-Retrons WD40 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT HEAT_2 HEAT_2 Feature: gene Location: 236-1267 bp Feature: domain Description: PEGA Location: 1088-1193 bp Feature: domain Description: PEGA Location: 1088-1193 bp Feature: gene Location: 1283-2119 bp Feature: gene Location: 2308-3636 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2800-3415 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 800-3415 bp Feature: gene Location: 4067-5896 bp Feature: gene Location: 5893-12345 bp Feature: domain Description: WD40 Location: 6079-6712 bp Feature: domain Description: WD40 Location: 6079-6712 bp Feature: domain Description: HEAT_2 Location: 6871-7030 bp Feature: domain Description: HEAT_2 Location: 6871-7030 bp Feature: domain Description: HEAT_2 Location: 7168-7405 bp Feature: domain Description: HEAT_2 Location: 7168-7405 bp Feature: domain Description: HEAT_2 Location: 7636-7906 bp Feature: domain Description: HEAT_2 Location: 7636-7906 bp Feature: domain Description: HEAT_2 Location: 8074-8230 bp Feature: domain Description: HEAT_2 Location: 8074-82 30 bp Feature: domain Description: HEAT Location: 8503-8572 bp Feature: domain Description: HEAT Location: 8503-8572 bp Feature: domain Description: HEAT_2 Location: 8731-8917 bp Feature: domain Description: HEAT_2 Location: 8731-8917 bp Feature: domain Description: HEAT_2 Location: 9676-9880 bp Feature: domain Description: HEAT_2 Location: 9676-9880 bp Feature: domain Description: HEAT_2 Location: 10042-10285 bp Feature: domain Description: HEAT_2 Location: 10042 -102 85 bp Feature: domain Description: HEAT_2 Location: 10339-10513 bp Feature: domain Description: HEAT_2 Location: 10339-10513 bp Feature: domain Description: HEAT_2 Location: 10612-10792 bp Feature: domain Description: HEAT_2 Location: 10612 -10792 bp Feature: domain Description: HEAT Location: 10816-10984 bp Feature: domain Description: HEAT Location: 10816-10984 bp Feature: domain Description: HEAT_2 Location: 11128-11356 bp Feature: domain Description: HEAT_2 Location: 1112 8-11356 bp Feature: domain Description: HEAT_2 Location: 12130-12307 bp Feature: domain Description: HEAT_2 Location: 12 130-12 307 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PEGA (pfam08308), WD40 (smart00320), HEAT_2 (pfam13646), HEAT (sd00044)

Seq: PBIS01000184.1 Sandaracinus sp. isolate SP2993 MHASMcontig_2856619, whole genome shotgun sequence (17261 bp)
Overview 1 RT 1: 1-5893 bp Neighborhood of RT #1 [1, 6657] RVT-GII TPR TPR TPR TPR TPR TPR TPR TPR TPR TPR Feature: gene Location: 1-843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193-775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193 -775 bp Feature: gene Location: 1451-2923 bp Feature: domain Description: TPR Location: 1664-1820 bp Feature: domain Description: TPR Location: 1664-1820 bp Feature: domain Description: TPR Location: 1880-2126 bp Feature: domain Description: TPR Location: 1880-2126 bp Feature: domain Description: TPR Location: 2156-2336 bp Feature: domain Description: TPR Location: 2156-23 3 6 bp Feature: domain Description: TPR Location: 2357-2624 bp Feature: domain Description: TPR Location: 23 57-2624 bp Feature: gene Location: 2947-6657 bp Feature: domain Description: TPR Location: 3289-3694 bp Feature: domain Description: TPR Location: 3 289-3 694 bp Feature: domain Description: TPR Location: 3730-3946 bp Feature: domain Description: TPR Location: 3 73 0-3 946 bp Feature: domain Description: TPR Location: 3988-4192 bp Feature: domain Description: TPR Location: 3 988-4192 bp Feature: domain Description: TPR Location: 4432-4684 bp Feature: domain Description: TPR Location: 443 2-4684 bp Feature: domain Description: TPR Location: 4897-5257 bp Feature: domain Description: TPR Location: 4897-5257 bp Feature: domain Description: TPR Location: 5434-5893 bp Feature: domain Description: TPR Location: 543 4-5893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), RVT-GII