myRT

myRT report for GCA_002728805.1_ASM272880v1

Download annotations/find similar RTs

Seq: PBVX01000043.1 Alteromonas sp. isolate RS411 11885, whole genome shotgun sequence (18364 bp)
Overview 1 RT 1: 2404-8174 bp Neighborhood of RT #1 [2404, 8182] PssA RVT-GII GIIM PilZ PilZ YciS Feature: gene Location: 2404-3207 bp Feature: domain Description: PssA Location: 2419-3094 bp Feature: domain Description: PssA Location: 241 9-3094 bp Feature: gene Location: 3552-3704 bp Feature: gene Location: 3820-5208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4150-4768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 50-4768 bp Feature: domain Description: GIIM Note: maturase Location: 4816-5047 bp Feature: domain Description: GIIM Note: maturase Location: 481 6-5047 bp Feature: gene Location: 5453-7795 bp Feature: domain Description: PilZ Location: 5945-6203 bp Feature: domain Description: PilZ Location: 5945-6203 bp Feature: domain Description: PilZ Location: 6908-7037 bp Feature: domain Description: PilZ Location: 6908-7037 bp Feature: gene Location: 7922-8182 bp Feature: domain Description: YciS Location: 7928-8174 bp Feature: domain Description: YciS Location: 7928-81 74 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PssA (COG1183), RVT-GII, GIIM (pfam08388), PilZ (pfam07238), YciS (COG3771)

Seq: PBVX01000057.1 Alteromonas sp. isolate RS411 15849, whole genome shotgun sequence (5172 bp)
Overview 1 RT 1: 2-2787 bp Neighborhood of RT #1 [2, 2801] PBP1_GalS_like RVT-GII GIIM hip Feature: gene Location: 2-514 bp Feature: domain Description: PBP1_GalS_like Location: 5-500 bp Feature: domain Description: PBP1_GalS_like Location: 5-500 bp Feature: gene Location: 620-2008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 950-1568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 950-1568 bp Feature: domain Description: GIIM Note: maturase Location: 1616-1847 bp Feature: domain Description: GIIM Note: maturase Location: 1616-1847 bp Feature: gene Location: 2135-2275 bp Feature: gene Location: 2514-2801 bp Feature: domain Description: hip Location: 2517-2787 bp Feature: domain Description: hip Location: 2 517-2 787 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT hip (TIGR00988), RVT-GII, GIIM (pfam08388)

Seq: PBVX01000218.1 Alteromonas sp. isolate RS411 31236, whole genome shotgun sequence (27810 bp)
Overview 1 RT 1: 13527-19728 bp Neighborhood of RT #1 [13527, 19728] HMA PRK14727 RVT-Retrons AAA_15 AAA_15 Feature: gene Location: 13527-15167 bp Feature: domain Description: HMA Location: 13539-13719 bp Feature: domain Description: HMA Location: 13 53 9-13 719 bp Feature: domain Description: PRK14727 Location: 13746-15162 bp Feature: domain Description: PRK14727 Location: 13 746-15162 bp Feature: gene Location: 15468-15596 bp Feature: gene Location: 15974-17119 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16241-16814 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16241-16814 bp Feature: gene Location: 17124-18479 bp Feature: domain Description: AAA_15 Location: 17127-17358 bp Feature: domain Description: AAA_15 Location: 17127-173 58 bp Feature: domain Description: AAA_15 Location: 17505-17868 bp Feature: domain Description: AAA_15 Location: 17505-17868 bp Feature: gene Location: 18766-19728 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HMA (pfam00403), PRK14727 (putative mercuric reductase; Provisional), RVT-Retrons, AAA_15 (pfam13175)

Seq: PBVX01000230.1 Alteromonas sp. isolate RS411 36755, whole genome shotgun sequence (7258 bp)
Overview 1 RT 1: 4695-6806 bp Neighborhood of RT #1 [4695, 6976] HigB-like_toxin RVT-GII GIIM Feature: gene Location: 4695-4973 bp Feature: domain Description: HigB-like_toxin Location: 4704-4971 bp Feature: domain Description: HigB-like_toxin Location: 4 704 -4 971 bp Feature: gene Location: 5281-5607 bp Feature: gene Location: 5627-6976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5906-6539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5906-6539 bp Feature: domain Description: GIIM Note: maturase Location: 6581-6806 bp Feature: domain Description: GIIM Note: maturase Location: 6581-6806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HigB-like_toxin (pfam05015), RVT-GII, GIIM (pfam08388)