myRT

myRT report for GCA_002729575.1_ASM272957v1

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Seq: PBYJ01000008.1 Oceanospirillaceae bacterium isolate NP32 98350, whole genome shotgun sequence (31192 bp)
Overview 1 RT 1: 3-3372 bp Neighborhood of RT #1 [3, 3372] RVT-GII GIIM HDAC_classII_2 Feature: gene Location: 3-179 bp Feature: gene Location: 412-633 bp Feature: gene Location: 798-2075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1014-1629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 4-1 629 bp Feature: domain Description: GIIM Note: maturase Location: 1680-1902 bp Feature: domain Description: GIIM Note: maturase Location: 1 680-1 902 bp Feature: gene Location: 2172-3101 bp Feature: domain Description: HDAC_classII_2 Location: 2232-3084 bp Feature: domain Description: HDAC_classII_2 Location: 2232-3084 bp Feature: gene Location: 3202-3372 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDAC_classII_2 (cd11599), RVT-GII, GIIM (pfam08388)

Seq: PBYJ01000041.1 Oceanospirillaceae bacterium isolate NP32 MHASMcontig_964774, whole genome shotgun sequence (8647 bp)
Overview 1 RT 1: 501-7313 bp Neighborhood of RT #1 [501, 7603] TIGR02646 COG3950 RVT-Retrons CHASE2 CHD COG4254 Feature: gene Location: 501-1163 bp Feature: domain Description: TIGR02646 Location: 564-969 bp Feature: domain Description: TIGR02 646 Location: 564-969 bp Feature: gene Location: 1141-2706 bp Feature: domain Description: COG3950 Location: 1258-2479 bp Feature: domain Description: COG3950 Location: 12 58-2 479 bp Feature: gene Location: 2804-3745 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2906-3506 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 906-3506 bp Feature: gene Location: 4419-6863 bp Feature: domain Description: CHASE2 Location: 4740-5784 bp Feature: domain Description: CHASE2 Location: 4740-5784 bp Feature: domain Description: CHD Location: 6087-6621 bp Feature: domain Description: CHD Location: 6087-662 1 bp Feature: gene Location: 6875-7603 bp Feature: domain Description: COG4254 Location: 6947-7313 bp Feature: domain Description: COG42 54 Location: 6947-7313 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, CHASE2 (smart01080), CHD (cd07302), TIGR02646 (TIGR02646 family protein)