myRT

myRT report for GCA_002729975.1_ASM272997v1

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Seq: PBYH01000007.1 Sphingobium sp. isolate NP34 29337, whole genome shotgun sequence (11396 bp)
Overview 1 RT 1: 4185-9620 bp Neighborhood of RT #1 [4185, 9620] Abi_C RVT-UG14 Feature: gene Location: 4185-4376 bp Feature: gene Location: 4500-5312 bp Feature: domain Description: Abi_C Location: 5031-5235 bp Feature: domain Description: Abi_C Location: 5031 -5235 bp Feature: gene Location: 5398-6942 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 5827-6313 bp Feature: RT Description: RVT-UG1 4 Note: UG1 4 RT Location: 5827-631 3 bp Feature: gene Location: 7650-8177 bp Feature: gene Location: 8625-9620 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Abi_C (pfam14355), RVT-UG14

Seq: PBYH01000019.1 Sphingobium sp. isolate NP34 74757, whole genome shotgun sequence (136085 bp)
Overview 1 RT 1: 133508-135559 bp Neighborhood of RT #1 [133508, 136002] Phage_int_SAM_1 INT_RitC_C_like ArdC RVT-GII Intron_maturas2 Feature: gene Location: 133508-134503 bp Feature: domain Description: Phage_int_SAM_1 Location: 133550-133796 bp Feature: domain Description: Phage_int_SAM_1 Location: 133550-133796 bp Feature: domain Description: INT_RitC_C_like Location: 133889-134429 bp Feature: domain Description: INT_RitC_C_like Location: 133889-13442 9 bp Feature: gene Location: 134504-134800 bp Feature: domain Description: ArdC Location: 134540-134726 bp Feature: domain Description: ArdC Location: 134540-13472 6 bp Feature: gene Location: 134839-136002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134998-135190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134998-135190 bp Feature: domain Description: Intron_maturas2 Location: 135271-135559 bp Feature: domain Description: Intron_maturas2 Location: 1352 71-135559 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), ArdC (COG4227), RVT-GII, Intron_maturas2 (pfam01348)

Seq: PBYH01000021.1 Sphingobium sp. isolate NP34 75477, whole genome shotgun sequence (121000 bp)
Overview 1 RT 1: 13-3136 bp Neighborhood of RT #1 [13, 3252] COG3293 COG3293 RVT-GII ArdC DUF736 Feature: gene Location: 13-765 bp Feature: domain Description: COG3293 Location: 19-331 bp Feature: domain Description: COG3 293 Location: 19-3 3 1 bp Feature: domain Description: COG3293 Location: 346-712 bp Feature: domain Description: COG3 293 Location: 3 46-712 bp Feature: gene Location: 931-1854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1345-1786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 45-1786 bp Feature: gene Location: 2334-2768 bp Feature: domain Description: ArdC Location: 2349-2757 bp Feature: domain Description: ArdC Location: 23 49-2757 bp Feature: gene Location: 2833-3252 bp Feature: domain Description: DUF736 Location: 2839-3136 bp Feature: domain Description: DUF73 6 Location: 283 9-3 13 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3293 (Transposase ), RVT-GII, ArdC (COG4227), DUF736 (pfam05284)

Seq: PBYH01000070.1 Sphingobium sp. isolate NP34 MHASMcontig_999321, whole genome shotgun sequence (13689 bp)
Overview 1 RT 1: 2-3276 bp Neighborhood of RT #1 [2, 3569] RVT-Retrons Trypsin_2 PRK12525 Feature: gene Location: 2-517 bp Feature: gene Location: 993-2567 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1152-1749 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1152-174 9 bp Feature: domain Description: Trypsin_2 Location: 2085-2490 bp Feature: domain Description: Trypsin_2 Location: 2085-24 90 bp Feature: gene Location: 2814-3107 bp Feature: gene Location: 3132-3569 bp Feature: domain Description: PRK12525 Location: 3168-3276 bp Feature: domain Description: PRK12525 Location: 3168-3276 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Trypsin_2 (pfam13365), PRK12525 (RNA polymerase sigma factor; Provisional)