myRT

myRT report for GCA_002731275.1_ASM273127v1

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Seq: PCBK01000030.1 Deltaproteobacteria bacterium isolate NP119 70843, whole genome shotgun sequence (262376 bp)
Overview 1 RT 1: 133934-142274 bp Neighborhood of RT #1 [133934, 142282] OmpR ligand_gated_channel ligand_gated_channel RVT-Retrons RVT-Retrons OEP OEP PRK05437 Feature: gene Location: 133934-134659 bp Feature: domain Description: OmpR Location: 133955-134639 bp Feature: domain Description: OmpR Location: 1 33955-1 34639 bp Feature: gene Location: 134665-136956 bp Feature: domain Description: ligand_gated_channel Location: 135151-135706 bp Feature: domain Description: ligand_gated_channel Location: 1 351 51 -1 35706 bp Feature: domain Description: ligand_gated_channel Location: 136168-136906 bp Feature: domain Description: ligand_gated_channel Location: 1 361 68-1 36906 bp Feature: gene Location: 137163-139316 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 137373-137994 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 37373-1 37994 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 138417-139011 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 3841 7-1 3901 1 bp Feature: gene Location: 139364-140995 bp Feature: domain Description: OEP Location: 139544-140288 bp Feature: domain Description: OEP Location: 1 39544-1 40288 bp Feature: domain Description: OEP Location: 140363-140912 bp Feature: domain Description: OEP Location: 1 40363-1 4091 2 bp Feature: gene Location: 141176-142282 bp Feature: domain Description: PRK05437 Location: 141260-142274 bp Feature: domain Description: PRK05437 Location: 1 41 260-1 42274 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), ligand_gated_channel (cd01347), RVT-Retrons, OEP (pfam02321), PRK05437 (isopentenyl pyrophosphate isomerase; Provisional)

Seq: PCBK01000088.1 Deltaproteobacteria bacterium isolate NP119 MHASMcontig_1082134, whole genome shotgun sequence (9278 bp)
Overview 1 RT 1: 2398-8711 bp Neighborhood of RT #1 [2398, 8824] LRR_RI LRR_RI LRR_RI LRR_RI LRR_RI LRR_RI LRR_RI LRR_RI LRR_RI LRR_RI LRR_RI LRR_RI LRR_RI integrase_gron RVT-UG16 DDE_Tnp_1_3 Feature: gene Location: 2398-4326 bp Feature: domain Description: LRR_RI Location: 2872-2923 bp Feature: domain Description: LRR_RI Location: 2 872 -2 92 3 bp Feature: domain Description: LRR_RI Location: 2938-3004 bp Feature: domain Description: LRR_RI Location: 2 938-3004 bp Feature: domain Description: LRR_RI Location: 3019-3085 bp Feature: domain Description: LRR_RI Location: 3019-3085 bp Feature: domain Description: LRR_RI Location: 3100-3166 bp Feature: domain Description: LRR_RI Location: 3100-3166 bp Feature: domain Description: LRR_RI Location: 3184-3247 bp Feature: domain Description: LRR_RI Location: 3184-32 47 bp Feature: domain Description: LRR_RI Location: 3262-3328 bp Feature: domain Description: LRR_RI Location: 32 62 -332 8 bp Feature: domain Description: LRR_RI Location: 3439-3505 bp Feature: domain Description: LRR_RI Location: 3439-3505 bp Feature: domain Description: LRR_RI Location: 3520-3586 bp Feature: domain Description: LRR_RI Location: 352 0-3586 bp Feature: domain Description: LRR_RI Location: 3601-3667 bp Feature: domain Description: LRR_RI Location: 3601-3667 bp Feature: domain Description: LRR_RI Location: 3682-3739 bp Feature: domain Description: LRR_RI Location: 3682 -3739 bp Feature: domain Description: LRR_RI Location: 3763-3829 bp Feature: domain Description: LRR_RI Location: 3763-382 9 bp Feature: domain Description: LRR_RI Location: 3844-3910 bp Feature: domain Description: LRR_RI Location: 3844-3910 bp Feature: domain Description: LRR_RI Location: 3925-3991 bp Feature: domain Description: LRR_RI Location: 392 5-3991 bp Feature: gene Location: 4734-5711 bp Feature: domain Description: integrase_gron Location: 4767-5709 bp Feature: domain Description: integrase_gron Location: 4767-5709 bp Feature: gene Location: 6202-7710 bp Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 6574-6979 bp Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 6574-6979 bp Feature: gene Location: 7919-8824 bp Feature: domain Description: DDE_Tnp_1_3 Location: 8252-8711 bp Feature: domain Description: DDE_Tnp_1_3 Location: 82 52 -8711 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LRR_RI (smart00368), integrase_gron (TIGR02249), RVT-UG16, DDE_Tnp_1_3 (pfam13612)

Seq: PCBK01000094.1 Deltaproteobacteria bacterium isolate NP119 MHASMcontig_1082762, whole genome shotgun sequence (100039 bp)
Overview 1 RT 1: 10371-14407 bp Neighborhood of RT #1 [10371, 14407] Serpin RVT-GII Feature: gene Location: 10371-10565 bp Feature: gene Location: 10729-11976 bp Feature: domain Description: Serpin Location: 10870-11968 bp Feature: domain Description: Serpin Location: 10870-11968 bp Feature: gene Location: 12699-13664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13023-13638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 023 -13 63 8 bp Feature: gene Location: 13927-14067 bp Feature: gene Location: 14072-14407 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Serpin (pfam00079), RVT-GII

Seq: PCBK01000106.1 Deltaproteobacteria bacterium isolate NP119 MHASMcontig_1084515, whole genome shotgun sequence (130943 bp)
Overview 1 RT 1: 60996-68163 bp Neighborhood of RT #1 [60996, 72623] PleD PRK10060 BaeS RVT-Retrons SWIM HEAT_2 Feature: gene Location: 60996-63101 bp Feature: domain Description: PleD Location: 61023-61425 bp Feature: domain Description: PleD Location: 61023-614 25 bp Feature: domain Description: PRK10060 Location: 61710-63072 bp Feature: domain Description: PRK10060 Location: 61710-63072 bp Feature: gene Location: 63206-64732 bp Feature: domain Description: BaeS Location: 63953-64670 bp Feature: domain Description: BaeS Location: 63953-64 670 bp Feature: gene Location: 64936-66345 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 65497-66106 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 654 97-66106 bp Feature: gene Location: 66356-67990 bp Feature: domain Description: SWIM Location: 67883-67964 bp Feature: domain Description: SWIM Location: 67883-67964 bp Feature: gene Location: 67980-72623 bp Feature: domain Description: HEAT_2 Location: 68010-68163 bp Feature: domain Description: HEAT_2 Location: 68010-68163 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PleD (COG3706), PRK10060 (cyclic di-GMP phosphodiesterase), BaeS (COG0642), RVT-Retrons, SWIM (pfam04434), HEAT_2 (pfam13646)

Seq: PCBK01000165.1 Deltaproteobacteria bacterium isolate NP119 MHASMcontig_1097961, whole genome shotgun sequence (128515 bp)
Overview 1 RT 1: 63169-74921 bp Neighborhood of RT #1 [63169, 75292] YdiL SpoIID RVT-Retrons WGR_MMR_like WD40 WD40 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 Feature: gene Location: 63169-63807 bp Feature: domain Description: YdiL Location: 63211-63745 bp Feature: domain Description: YdiL Location: 63211-63745 bp Feature: gene Location: 63810-65465 bp Feature: domain Description: SpoIID Location: 64434-65451 bp Feature: domain Description: SpoIID Location: 64434-65 45 1 bp Feature: gene Location: 65586-66926 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 66060-66678 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 66060-66678 bp Feature: gene Location: 66962-68809 bp Feature: domain Description: WGR_MMR_like Location: 68648-68792 bp Feature: domain Description: WGR_MMR_like Location: 68648-68792 bp Feature: gene Location: 68825-75292 bp Feature: domain Description: WD40 Location: 68843-69227 bp Feature: domain Description: WD40 Location: 68843-69227 bp Feature: domain Description: WD40 Location: 69305-69800 bp Feature: domain Description: WD40 Location: 69305 -69800 bp Feature: domain Description: HEAT_2 Location: 69932-70184 bp Feature: domain Description: HEAT_2 Location: 69932-70184 bp Feature: domain Description: HEAT_2 Location: 70667-70910 bp Feature: domain Description: HEAT_2 Location: 70667-70910 bp Feature: domain Description: HEAT_2 Location: 71354-71480 bp Feature: domain Description: HEAT_2 Location: 7135 4-71480 bp Feature: domain Description: HEAT_2 Location: 71813-71975 bp Feature: domain Description: HEAT_2 Location: 71813-71975 bp Feature: domain Description: HEAT Location: 72668-72752 bp Feature: domain Description: HEAT Location: 72668-7275 2 bp Feature: domain Description: HEAT_2 Location: 72806-73004 bp Feature: domain Description: HEAT_2 Location: 72806-73004 bp Feature: domain Description: HEAT_2 Location: 73052-73268 bp Feature: domain Description: HEAT_2 Location: 7305 2-73268 bp Feature: domain Description: HEAT_2 Location: 73334-73595 bp Feature: domain Description: HEAT_2 Location: 73334-735 95 bp Feature: domain Description: HEAT_2 Location: 73634-73898 bp Feature: domain Description: HEAT_2 Location: 73634-73898 bp Feature: domain Description: HEAT_2 Location: 73955-74198 bp Feature: domain Description: HEAT_2 Location: 7395 5 -74198 bp Feature: domain Description: HEAT_2 Location: 74462-74624 bp Feature: domain Description: HEAT_2 Location: 74462-74624 bp Feature: domain Description: HEAT_2 Location: 74738-74921 bp Feature: domain Description: HEAT_2 Location: 74738-74921 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YdiL (COG1266), SpoIID (pfam08486), RVT-Retrons, WGR_MMR_like (cd07996), WD40 (smart00320), HEAT_2 (pfam13646), HEAT (sd00044)

Seq: PCBK01000175.1 Deltaproteobacteria bacterium isolate NP119 MHASMcontig_1100942, whole genome shotgun sequence (46758 bp)
Overview 1 RT 1: 36912-46432 bp Neighborhood of RT #1 [36912, 46665] DUF3421 DUF3421 DUF3421 TECPR TECPR TECPR HEAT_2 HEAT_2 Aldo_ket_red RVT-Retrons YfmG Feature: gene Location: 36912-40877 bp Feature: domain Description: DUF3421 Location: 37056-37389 bp Feature: domain Description: DUF3421 Location: 37056 -37389 bp Feature: domain Description: DUF3421 Location: 39117-39447 bp Feature: domain Description: DUF3421 Location: 39117-39447 bp Feature: domain Description: DUF3421 Location: 39855-40167 bp Feature: domain Description: DUF3421 Location: 39855-4016 7 bp Feature: domain Description: TECPR Location: 40443-40536 bp Feature: domain Description: TECPR Location: 40443-40536 bp Feature: domain Description: TECPR Location: 40650-40746 bp Feature: domain Description: TECPR Location: 406 50-40746 bp Feature: domain Description: TECPR Location: 40755-40854 bp Feature: domain Description: TECPR Location: 40755-40854 bp Feature: gene Location: 41583-44012 bp Feature: domain Description: HEAT_2 Location: 41679-41925 bp Feature: domain Description: HEAT_2 Location: 416 79-41925 bp Feature: domain Description: HEAT_2 Location: 42207-42420 bp Feature: domain Description: HEAT_2 Location: 42207-42420 bp Feature: domain Description: Aldo_ket_red Location: 43221-43953 bp Feature: domain Description: Aldo_ket_red Location: 43221-43953 bp Feature: gene Location: 44157-45722 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44826-45450 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44826 -45450 bp Feature: gene Location: 45715-46665 bp Feature: domain Description: YfmG Location: 45922-46432 bp Feature: domain Description: YfmG Location: 45922-46 432 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3421 (pfam11901), TECPR (smart00706), HEAT_2 (pfam13646), Aldo_ket_red (pfam00248), RVT-Retrons, YfmG (COG1262)