myRT

myRT report for GCA_002733235.1_ASM273323v1

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Seq: NVUZ01000034.1 Pseudomonas sp. isolate NORP76 Contig_source1382A_23392, whole genome shotgun sequence (73259 bp)
Overview 1 RT 1: 47824-52475 bp Neighborhood of RT #1 [47824, 52495] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM DDE_Tnp_IS66_C ACR3 Feature: gene Location: 47824-48159 bp Feature: domain Description: TnpB_IS66 Location: 47842-48130 bp Feature: domain Description: TnpB_IS66 Location: 47842-481 30 bp Feature: gene Location: 48221-49549 bp Feature: domain Description: LZ_Tnp_IS66 Location: 48353-48560 bp Feature: domain Description: LZ_Tnp_IS66 Location: 48353-48560 bp Feature: domain Description: zf-IS66 Location: 48599-48713 bp Feature: domain Description: zf-IS66 Location: 48599-4871 3 bp Feature: domain Description: DDE_Tnp_IS66 Location: 48755-49529 bp Feature: domain Description: DDE_Tnp_IS66 Location: 48755-49529 bp Feature: gene Location: 50107-51768 bp Feature: RT Description: RVT_N Location: 50152-50395 bp Feature: RT Description: RVT_N Location: 501 52-50395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50440-51076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50440-51 076 bp Feature: domain Description: GIIM Note: maturase Location: 51133-51361 bp Feature: domain Description: GIIM Note: maturase Location: 51 1 33-51 361 bp Feature: gene Location: 51960-52094 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 51966-52077 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 51 966-52077 bp Feature: gene Location: 52133-52495 bp Feature: domain Description: ACR3 Location: 52142-52475 bp Feature: domain Description: ACR3 Location: 521 42-52475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), ACR3 (COG0798)

Seq: NVUZ01000074.1 Pseudomonas sp. isolate NORP76 Contig_source1382A_24078, whole genome shotgun sequence (22337 bp)
Overview 1 RT 1: 17077-22305 bp Neighborhood of RT #1 [17077, 22334] Nnt1 YbaY RVT_N RVT-GII YkfC HNH TIGR00244 ribD Feature: gene Location: 17077-17730 bp Feature: domain Description: Nnt1 Location: 17137-17548 bp Feature: domain Description: Nnt1 Location: 17137-17548 bp Feature: gene Location: 17727-18182 bp Feature: domain Description: YbaY Location: 17748-18177 bp Feature: domain Description: YbaY Location: 17748-18177 bp Feature: gene Location: 19364-21070 bp Feature: RT Description: RVT_N Location: 19421-19658 bp Feature: RT Description: RVT_N Location: 1942 1-19658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19709-20345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19709-2 0345 bp Feature: domain Description: YkfC Location: 20477-20648 bp Feature: domain Description: YkfC Location: 2 0477-2 0648 bp Feature: domain Description: HNH Note: nucleases Location: 20882-21020 bp Feature: domain Description: HNH Note: nucleases Location: 2 0882 -2 102 0 bp Feature: gene Location: 21124-21627 bp Feature: domain Description: TIGR00244 Location: 21166-21604 bp Feature: domain Description: TIGR002 44 Location: 2 1166-2 1604 bp Feature: gene Location: 21624-22334 bp Feature: domain Description: ribD Location: 21660-22305 bp Feature: domain Description: ribD Location: 2 1660-2 2 305 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nnt1 (COG3897), YbaY (COG3126), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), TIGR00244 (transcriptional regulator NrdR), ribD (PRK10786)

Seq: NVUZ01000127.1 Pseudomonas sp. isolate NORP76 Contig_source1383C_22850, whole genome shotgun sequence (116980 bp)
Overview 1 RT 1: 114753-116778 bp Neighborhood of RT #1 [114753, 116778] PRK08139 RVT-GII Feature: gene Location: 114753-115532 bp Feature: domain Description: PRK08139 Location: 114768-115524 bp Feature: domain Description: PRK0813 9 Location: 114768-115524 bp Feature: gene Location: 115554-115781 bp Feature: gene Location: 115953-116219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115956-116217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115956-116217 bp Feature: gene Location: 116317-116778 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08139 (enoyl-CoA hydratase; Validated), RVT-GII

Seq: NVUZ01000116.1 Pseudomonas sp. isolate NORP76 Contig_source1383C_2383, whole genome shotgun sequence (38057 bp)
Overview 1 RT 1: 15298-20799 bp Neighborhood of RT #1 [15298, 20981] ribD TIGR00244 RVT_N RVT-GII YkfC HNH YbaY Nnt1 Feature: gene Location: 15298-16434 bp Feature: domain Description: ribD Location: 15334-16405 bp Feature: domain Description: ribD Location: 15334 -164 05 bp Feature: gene Location: 16431-16934 bp Feature: domain Description: TIGR00244 Location: 16473-16911 bp Feature: domain Description: TIGR0024 4 Location: 164 73-16911 bp Feature: gene Location: 16988-18694 bp Feature: RT Description: RVT_N Location: 17045-17282 bp Feature: RT Description: RVT_N Location: 1704 5-17282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17333-17969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17333-17969 bp Feature: domain Description: YkfC Location: 18101-18272 bp Feature: domain Description: YkfC Location: 18101-18272 bp Feature: domain Description: HNH Note: nucleases Location: 18506-18644 bp Feature: domain Description: HNH Note: nucleases Location: 18506-1864 4 bp Feature: gene Location: 19876-20331 bp Feature: domain Description: YbaY Location: 19897-20326 bp Feature: domain Description: YbaY Location: 19897-20326 bp Feature: gene Location: 20328-20981 bp Feature: domain Description: Nnt1 Location: 20388-20799 bp Feature: domain Description: Nnt1 Location: 20388-20799 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ribD (PRK10786), TIGR00244 (transcriptional regulator NrdR), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), YbaY (COG3126), Nnt1 (COG3897)

Seq: NVUZ01000112.1 Pseudomonas sp. isolate NORP76 Contig_source1383C_954, whole genome shotgun sequence (73308 bp)
Overview 1 RT 1: 47824-52475 bp Neighborhood of RT #1 [47824, 52495] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM DDE_Tnp_IS66_C ACR3 Feature: gene Location: 47824-48159 bp Feature: domain Description: TnpB_IS66 Location: 47842-48130 bp Feature: domain Description: TnpB_IS66 Location: 47842-48130 bp Feature: gene Location: 48221-49549 bp Feature: domain Description: LZ_Tnp_IS66 Location: 48353-48560 bp Feature: domain Description: LZ_Tnp_IS66 Location: 4835 3-485 60 bp Feature: domain Description: zf-IS66 Location: 48599-48713 bp Feature: domain Description: zf-IS66 Location: 485 99-48713 bp Feature: domain Description: DDE_Tnp_IS66 Location: 48755-49529 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4875 5 -495 29 bp Feature: gene Location: 50107-51768 bp Feature: RT Description: RVT_N Location: 50152-50395 bp Feature: RT Description: RVT_N Location: 5 015 2-5 0395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50440-51076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 0440-5 1076 bp Feature: domain Description: GIIM Note: maturase Location: 51133-51361 bp Feature: domain Description: GIIM Note: maturase Location: 5 1133-5 1361 bp Feature: gene Location: 51960-52094 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 51966-52077 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5 1966-5 2077 bp Feature: gene Location: 52133-52495 bp Feature: domain Description: ACR3 Location: 52142-52475 bp Feature: domain Description: ACR3 Location: 5 2142-5 2475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), ACR3 (COG0798)