myRT

myRT report for GCA_002733545.1_ASM273354v1

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Seq: NVVX01000014.1 Alkaliphilus sp. isolate NORP52 Contig_source1383C_1150, whole genome shotgun sequence (63711 bp)
Overview 1 RT 1: 36454-39409 bp Neighborhood of RT #1 [36454, 39720] FeFe_hydrog_A Nar1 RVT-DGRs Avd_like YfmG Feature: gene Location: 36454-36600 bp Feature: gene Location: 36612-36806 bp Feature: domain Description: FeFe_hydrog_A Location: 36615-36735 bp Feature: domain Description: FeFe_hydrog_A Location: 3661 5-36735 bp Feature: domain Description: Nar1 Location: 36738-36786 bp Feature: domain Description: Nar1 Location: 36738-36786 bp Feature: gene Location: 36890-37924 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 37103-37700 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 371 03-37700 bp Feature: gene Location: 38220-38588 bp Feature: domain Description: Avd_like Location: 38253-38580 bp Feature: domain Description: Avd_like Location: 38253-38580 bp Feature: gene Location: 38653-39720 bp Feature: domain Description: YfmG Location: 39310-39409 bp Feature: domain Description: YfmG Location: 3931 0-39409 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FeFe_hydrog_A (TIGR02512), Nar1 (COG4624), RVT-DGRs, Avd_like (cd16376), YfmG (COG1262)

Seq: NVVX01000015.1 Alkaliphilus sp. isolate NORP52 Contig_source1383C_1227, whole genome shotgun sequence (60771 bp)
Overview 1 RT 1: 50454-56050 bp Neighborhood of RT #1 [50454, 56073] COG2509 Abi_2 RVT-Retrons YbjD AAA_15 Feature: gene Location: 50454-52043 bp Feature: domain Description: COG2509 Location: 50472-52035 bp Feature: domain Description: COG2 509 Location: 50472 -52 035 bp Feature: gene Location: 52146-53165 bp Feature: domain Description: Abi_2 Location: 52278-52872 bp Feature: domain Description: Abi_2 Location: 52 2 78-52 872 bp Feature: gene Location: 53220-54278 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53352-53928 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53352 -5392 8 bp Feature: gene Location: 54533-55795 bp Feature: domain Description: YbjD Location: 54569-55076 bp Feature: domain Description: YbjD Location: 54569-55076 bp Feature: gene Location: 55792-56073 bp Feature: domain Description: AAA_15 Location: 55795-56050 bp Feature: domain Description: AAA_15 Location: 55795-56050 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2509 (FAD-dependent dehydrogenase ), Abi_2 (pfam07751), RVT-Retrons, YbjD (COG3593), AAA_15 (pfam13175)

Seq: NVVX01000019.1 Alkaliphilus sp. isolate NORP52 Contig_source1383C_1528, whole genome shotgun sequence (51738 bp)
Overview 1 RT 1: 17354-23550 bp Neighborhood of RT #1 [17354, 23576] GltP RVT-GII GIIM CdsB TIGR00275 Feature: gene Location: 17354-18622 bp Feature: domain Description: GltP Location: 17363-18608 bp Feature: domain Description: GltP Location: 173 63 -18608 bp Feature: gene Location: 18633-18896 bp Feature: gene Location: 19431-20744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19689-20382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19689-203 82 bp Feature: domain Description: GIIM Note: maturase Location: 20445-20655 bp Feature: domain Description: GIIM Note: maturase Location: 20445-20655 bp Feature: gene Location: 20950-22191 bp Feature: domain Description: CdsB Location: 20953-22171 bp Feature: domain Description: CdsB Location: 20953 -22171 bp Feature: gene Location: 22182-23576 bp Feature: domain Description: TIGR00275 Location: 22317-23550 bp Feature: domain Description: TIGR00275 Location: 223 17-23 550 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GltP (COG1301), RVT-GII, GIIM (pfam08388), CdsB (COG3681), TIGR00275 (flavoprotein, HI0933 family)

Seq: NVVX01000028.1 Alkaliphilus sp. isolate NORP52 Contig_source1383C_2643, whole genome shotgun sequence (34698 bp)
Overview 1 RT 1: 360-4166 bp 2 RT 2: 26659-33957 bp Neighborhood of RT #1 [360, 4330] RVT-GII SpsE DEDD_Tnp_IS110 Transposase_20 Neighborhood of RT #2 [26659, 34016] VirB4 KOG4768 RVT-GII Intron_maturas2 COG5421 RVT_N RVT-GII Feature: gene Location: 360-536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 363-510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 363-510 bp Feature: gene Location: 1639-2652 bp Feature: domain Description: SpsE Location: 1765-2647 bp Feature: domain Description: SpsE Location: 1765-264 7 bp Feature: gene Location: 2915-4330 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 3065-3542 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 3065-354 2 bp Feature: domain Description: Transposase_20 Location: 3890-4166 bp Feature: domain Description: Transposase_20 Location: 3890-4 166 bp Feature: gene Location: 26659-27036 bp Feature: domain Description: VirB4 Location: 26671-26797 bp Feature: domain Description: VirB4 Location: 26671-26797 bp Feature: gene Location: 27186-27608 bp Feature: domain Description: KOG4768 Location: 27192-27603 bp Feature: domain Description: KOG4 768 Location: 27192-27603 bp Feature: gene Location: 27730-29220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28057-28894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28057-28894 bp Feature: domain Description: Intron_maturas2 Location: 28966-29209 bp Feature: domain Description: Intron_maturas2 Location: 28966-29209 bp Feature: gene Location: 29764-30537 bp Feature: gene Location: 30745-30969 bp Feature: gene Location: 31166-32716 bp Feature: domain Description: COG5421 Location: 31643-32702 bp Feature: domain Description: COG54 21 Location: 3164 3-32702 bp Feature: gene Location: 32805-33131 bp Feature: gene Location: 33225-34016 bp Feature: domain Description: RVT_N Location: 33288-33522 bp Feature: domain Description: RVT_N Location: 33288-33522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33576-33957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33576-33957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, SpsE (COG2089), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), VirB4 (COG3451), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), Intron_maturas2 (pfam01348), COG5421 (Transposase ), RVT_N (pfam13655)

Seq: NVVX01000035.1 Alkaliphilus sp. isolate NORP52 Contig_source1383C_3431, whole genome shotgun sequence (28131 bp)
Overview 1 RT 1: 7558-10734 bp Neighborhood of RT #1 [7558, 10772] RVT-GII GIIM DUF3990 Feature: gene Location: 7558-7803 bp Feature: gene Location: 7853-8125 bp Feature: gene Location: 8213-9493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8441-9062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8441-9062 bp Feature: domain Description: GIIM Note: maturase Location: 9104-9332 bp Feature: domain Description: GIIM Note: maturase Location: 9104-9332 bp Feature: gene Location: 9787-10146 bp Feature: gene Location: 10278-10772 bp Feature: domain Description: DUF3990 Location: 10281-10734 bp Feature: domain Description: DUF3990 Location: 10281-10734 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF3990 (pfam13151)

Seq: NVVX01000042.1 Alkaliphilus sp. isolate NORP52 Contig_source1383C_4972, whole genome shotgun sequence (20271 bp)
Overview 1 RT 1: 12023-15684 bp Neighborhood of RT #1 [12023, 15689] RVT-GII GIIM HycB napH_ O2ase_reductase_like Feature: gene Location: 12023-12163 bp Feature: gene Location: 12440-12664 bp Feature: gene Location: 12808-13893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12841-13462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12841-1346 2 bp Feature: domain Description: GIIM Note: maturase Location: 13504-13735 bp Feature: domain Description: GIIM Note: maturase Location: 13504-13735 bp Feature: gene Location: 14003-14212 bp Feature: domain Description: HycB Location: 14036-14204 bp Feature: domain Description: HycB Location: 14036 -14204 bp Feature: gene Location: 14229-15689 bp Feature: domain Description: napH_ Location: 14328-14934 bp Feature: domain Description: napH_ Location: 14328-14934 bp Feature: domain Description: O2ase_reductase_like Location: 15021-15684 bp Feature: domain Description: O2ase_reductase_like Location: 15021-156 84 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HycB (COG1142), napH_ (TIGR02163), O2ase_reductase_like (cd06187)

Seq: NVVX01000044.1 Alkaliphilus sp. isolate NORP52 Contig_source1383C_5840, whole genome shotgun sequence (17531 bp)
Overview 1 RT 1: 11898-16875 bp Neighborhood of RT #1 [11898, 16949] ABC_cobalt_CbiO_domain1 ABC_cobalt_CbiO_domain1 murJ_mviN RVT-GII GIIM Feature: gene Location: 11898-14453 bp Feature: domain Description: ABC_cobalt_CbiO_domain1 Location: 12180-12255 bp Feature: domain Description: ABC_cobalt_CbiO_domain1 Location: 12180-12255 bp Feature: domain Description: ABC_cobalt_CbiO_domain1 Location: 13812-13968 bp Feature: domain Description: ABC_cobalt_CbiO_domain1 Location: 13812-13968 bp Feature: gene Location: 15115-15549 bp Feature: domain Description: murJ_mviN Location: 15121-15511 bp Feature: domain Description: murJ_mviN Location: 15121-15511 bp Feature: gene Location: 15705-16949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15909-16566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15909-16566 bp Feature: domain Description: GIIM Note: maturase Location: 16647-16875 bp Feature: domain Description: GIIM Note: maturase Location: 16647 -1687 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_cobalt_CbiO_domain1 (cd03225), murJ_mviN (TIGR01695), RVT-GII, GIIM (pfam08388)

Seq: NVVX01000057.1 Alkaliphilus sp. isolate NORP52 Contig_source1383C_9796, whole genome shotgun sequence (10790 bp)
Overview 1 RT 1: 2-3721 bp Neighborhood of RT #1 [2, 3721] MATE_MurJ_like RVT-GII Epimerase_2 Feature: gene Location: 2-265 bp Feature: gene Location: 600-1001 bp Feature: domain Description: MATE_MurJ_like Location: 612-903 bp Feature: domain Description: MATE_MurJ_like Location: 612-903 bp Feature: gene Location: 1521-1868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1725-1848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1725-18 48 bp Feature: gene Location: 1969-3267 bp Feature: domain Description: Epimerase_2 Location: 2563-3241 bp Feature: domain Description: Epimerase_2 Location: 2563-3241 bp Feature: gene Location: 3560-3721 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MATE_MurJ_like (cd13123), RVT-GII, Epimerase_2 (pfam02350)