myRT

myRT report for GCA_002735265.1_ASM273526v1

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Seq: PDXK01000004.1 Streptococcus agalactiae strain FDAARGOS_413 pRIID_121.contig.3, whole genome shotgun sequence (892999 bp)
Overview 1 RT 1: 146356-152615 bp 2 RT 2: 509145-512493 bp 3 RT 3: 585083-589691 bp 4 RT 4: 637349-645891 bp Neighborhood of RT #1 [146356, 152620] COG4684 PGM2 RVT-GII GIIM MdlB Neighborhood of RT #2 [509145, 512493] GlnQ RVT-GII GIIM Neighborhood of RT #3 [585083, 589696] DUF4956 PolyPPase_VTC_like RVT-GII GIIM InsE PHA02517 Neighborhood of RT #4 [637349, 645893] MurC RVT-GII GIIM HepA Der Feature: gene Location: 146356-146928 bp Feature: domain Description: COG4684 Location: 146359-146923 bp Feature: domain Description: COG4684 Location: 1 46359-1 46923 bp Feature: gene Location: 147038-148756 bp Feature: domain Description: PGM2 Location: 147155-148730 bp Feature: domain Description: PGM2 Location: 1 471 55-1 48730 bp Feature: gene Location: 149275-150585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 149512-150127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4951 2-1 501 27 bp Feature: domain Description: GIIM Note: maturase Location: 150181-150397 bp Feature: domain Description: GIIM Note: maturase Location: 1 501 81 -1 50397 bp Feature: gene Location: 150676-150873 bp Feature: gene Location: 150887-152620 bp Feature: domain Description: MdlB Location: 150923-152615 bp Feature: domain Description: MdlB Location: 1 50923-1 5261 5 bp Feature: gene Location: 509145-509885 bp Feature: domain Description: GlnQ Location: 509163-509874 bp Feature: domain Description: GlnQ Location: 5091 63-509874 bp Feature: gene Location: 509903-510070 bp Feature: gene Location: 510402-511712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 510639-511254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 0639-51 1 254 bp Feature: domain Description: GIIM Note: maturase Location: 511308-511524 bp Feature: domain Description: GIIM Note: maturase Location: 51 1 308-51 1 524 bp Feature: gene Location: 511892-512242 bp Feature: gene Location: 512335-512493 bp Feature: gene Location: 585083-585760 bp Feature: domain Description: DUF4956 Location: 585170-585533 bp Feature: domain Description: DUF4956 Location: 5851 70-585533 bp Feature: gene Location: 585812-586507 bp Feature: domain Description: PolyPPase_VTC_like Location: 585830-586472 bp Feature: domain Description: PolyPPase_VTC_like Location: 585830-586472 bp Feature: gene Location: 586873-588183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 587110-587725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5871 1 0-587725 bp Feature: domain Description: GIIM Note: maturase Location: 587779-587995 bp Feature: domain Description: GIIM Note: maturase Location: 587779-587995 bp Feature: gene Location: 588552-588827 bp Feature: domain Description: InsE Location: 588564-588813 bp Feature: domain Description: InsE Location: 588564-58881 3 bp Feature: gene Location: 588947-589696 bp Feature: domain Description: PHA02517 Location: 588959-589691 bp Feature: domain Description: PHA0251 7 Location: 588959-589691 bp Feature: gene Location: 637349-638680 bp Feature: domain Description: MurC Location: 637358-638654 bp Feature: domain Description: MurC Location: 637358-638654 bp Feature: gene Location: 638690-639307 bp Feature: gene Location: 639479-640756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 639683-640298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 639683-640298 bp Feature: domain Description: GIIM Note: maturase Location: 640352-640568 bp Feature: domain Description: GIIM Note: maturase Location: 640352-640568 bp Feature: gene Location: 641329-644427 bp Feature: domain Description: HepA Location: 642727-644419 bp Feature: domain Description: HepA Location: 642727-64441 9 bp Feature: gene Location: 644583-645893 bp Feature: domain Description: Der Location: 644586-645891 bp Feature: domain Description: Der Location: 644586-645891 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4684 (Uncharacterized membrane protein ), PGM2 (cd05799), RVT-GII, GIIM (pfam08388), MdlB (COG1132), GlnQ (COG1126), DUF4956 (pfam16316), PolyPPase_VTC_like (cd07750), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed)
MurC (COG0773), HepA (COG0553), Der (COG1160)

Seq: PDXK01000006.1 Streptococcus agalactiae strain FDAARGOS_413 pRIID_121.contig.5, whole genome shotgun sequence (1498687 bp)
Overview 1 RT 1: 199140-205264 bp 2 RT 2: 409960-415016 bp 3 RT 3: 590395-596423 bp 4 RT 4: 679713-687420 bp 5 RT 5: 736504-743044 bp 6 RT 6: 798257-802126 bp 7 RT 7: 888680-898807 bp 8 RT 8: 913898-921585 bp 9 RT 9: 1021048-1026477 bp 10 RT 10: 1110990-1118618 bp 11 RT 11: 1323521-1328051 bp 12 RT 12: 1372674-1377753 bp Neighborhood of RT #1 [199140, 205281] PLN02563 RVT-GII GIIM BaeS Neighborhood of RT #2 [409960, 415042] MurE COG3442 RVT-GII GIIM lipoyltrans Neighborhood of RT #3 [590395, 596437] YraQ YcgQ RVT-GII GIIM PRK10416 Cof Neighborhood of RT #4 [679713, 687488] Peptidase_M23 Phage_lysozyme2 PRK08581 TraC-F-type RVT_N RVT-GII GIIM TraC-F-type PrgI Neighborhood of RT #5 [736504, 743046] PRK05764 PRK07246 RVT-GII GIIM PRK08643 Neighborhood of RT #6 [798257, 802134] RHOD ROK_glcA_fam RVT_N RVT-GII GIIM ROK_glcA_fam YqgQ Neighborhood of RT #7 [888680, 898807] RVT_N RVT-GII GIIM N6_Mtase COG4646 KOG0390 Neighborhood of RT #8 [913898, 921671] Peptidase_M23 Phage_lysozyme2 PRK08581 TraC-F-type RVT_N RVT-GII GIIM TraC-F-type PrgI Neighborhood of RT #9 [1021048, 1026515] CelB CelA RVT_N RVT-GII GIIM CelC DeoR Neighborhood of RT #10 [1110990, 1118719] Peptidase_M23 Phage_lysozyme2 PRK08581 TraC-F-type RVT_N RVT-GII GIIM TraC-F-type PrgI Neighborhood of RT #11 [1323521, 1328062] PhoE PRK08295 RVT-GII GIIM DUF2992 NTP_transf_6 Neighborhood of RT #12 [1372674, 1377785] AXE1 NagC RVT_N RVT-GII GIIM NagC NAL Feature: gene Location: 199140-201641 bp Feature: domain Description: PLN02563 Location: 199149-201639 bp Feature: domain Description: PLN02 563 Location: 199149-2 01639 bp Feature: gene Location: 201965-202126 bp Feature: gene Location: 202197-203507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202434-203049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 02 434-2 03049 bp Feature: domain Description: GIIM Note: maturase Location: 203103-203319 bp Feature: domain Description: GIIM Note: maturase Location: 2 03103-2 03319 bp Feature: gene Location: 203585-204193 bp Feature: gene Location: 204286-205281 bp Feature: domain Description: BaeS Location: 204424-205264 bp Feature: domain Description: BaeS Location: 2 0442 4-2 052 64 bp Feature: gene Location: 409960-411303 bp Feature: domain Description: MurE Location: 409993-411298 bp Feature: domain Description: MurE Location: 409993-4112 98 bp Feature: gene Location: 411417-412088 bp Feature: domain Description: COG3442 Location: 411420-412077 bp Feature: domain Description: COG3442 Location: 41142 0-412 077 bp Feature: gene Location: 412154-413464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 412391-413006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 412 391-413006 bp Feature: domain Description: GIIM Note: maturase Location: 413060-413276 bp Feature: domain Description: GIIM Note: maturase Location: 413060-4132 76 bp Feature: gene Location: 413796-414005 bp Feature: gene Location: 414053-415042 bp Feature: domain Description: lipoyltrans Location: 414068-415016 bp Feature: domain Description: lipoyltrans Location: 414068-415016 bp Feature: gene Location: 590395-591297 bp Feature: domain Description: YraQ Location: 590398-591295 bp Feature: domain Description: YraQ Location: 590398-5912 95 bp Feature: gene Location: 591297-592109 bp Feature: domain Description: YcgQ Location: 591300-592107 bp Feature: domain Description: YcgQ Location: 591300-592 107 bp Feature: gene Location: 592175-593485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 592412-593027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 592 412 -59302 7 bp Feature: domain Description: GIIM Note: maturase Location: 593081-593297 bp Feature: domain Description: GIIM Note: maturase Location: 593081-5932 97 bp Feature: gene Location: 594003-595613 bp Feature: domain Description: PRK10416 Location: 594342-595602 bp Feature: domain Description: PRK10416 Location: 594342 -595602 bp Feature: gene Location: 595613-596437 bp Feature: domain Description: Cof Location: 595622-596423 bp Feature: domain Description: Cof Location: 59562 2 -59642 3 bp Feature: gene Location: 679713-682514 bp Feature: domain Description: Peptidase_M23 Location: 681156-681369 bp Feature: domain Description: Peptidase_M2 3 Location: 681156-681369 bp Feature: domain Description: Phage_lysozyme2 Location: 681510-682023 bp Feature: domain Description: Phage_lysozyme2 Location: 681510-682 02 3 bp Feature: domain Description: PRK08581 Location: 682140-682476 bp Feature: domain Description: PRK08581 Location: 682 140-682 476 bp Feature: gene Location: 682516-683550 bp Feature: domain Description: TraC-F-type Location: 682681-683377 bp Feature: domain Description: TraC-F-type Location: 682 681-683377 bp Feature: gene Location: 683483-685189 bp Feature: RT Description: RVT_N Location: 683588-683828 bp Feature: RT Description: RVT_N Location: 683588-68382 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683876-684536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683876-684536 bp Feature: domain Description: GIIM Note: maturase Location: 684605-684824 bp Feature: domain Description: GIIM Note: maturase Location: 684605-68482 4 bp Feature: gene Location: 685685-687178 bp Feature: domain Description: TraC-F-type Location: 686462-686864 bp Feature: domain Description: TraC-F-type Location: 686462 -686864 bp Feature: gene Location: 687135-687488 bp Feature: domain Description: PrgI Location: 687147-687420 bp Feature: domain Description: PrgI Location: 687147-68742 0 bp Feature: gene Location: 736504-737697 bp Feature: domain Description: PRK05764 Location: 736510-737683 bp Feature: domain Description: PRK05764 Location: 736510-737683 bp Feature: gene Location: 737783-740248 bp Feature: domain Description: PRK07246 Location: 737786-740246 bp Feature: domain Description: PRK072 46 Location: 737786-7402 46 bp Feature: gene Location: 740415-741725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 740652-741267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 740652 -7412 67 bp Feature: domain Description: GIIM Note: maturase Location: 741321-741537 bp Feature: domain Description: GIIM Note: maturase Location: 74132 1-741537 bp Feature: gene Location: 742057-742230 bp Feature: gene Location: 742255-743046 bp Feature: domain Description: PRK08643 Location: 742285-743044 bp Feature: domain Description: PRK08643 Location: 742 2 85-743044 bp Feature: gene Location: 798257-798637 bp Feature: domain Description: RHOD Location: 798386-798620 bp Feature: domain Description: RHOD Location: 798386-79862 0 bp Feature: gene Location: 798649-799248 bp Feature: domain Description: ROK_glcA_fam Location: 798805-799237 bp Feature: domain Description: ROK_glcA_fam Location: 798805-7992 37 bp Feature: gene Location: 799181-800887 bp Feature: RT Description: RVT_N Location: 799286-799526 bp Feature: RT Description: RVT_N Location: 7992 86-79952 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 799574-800234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 799574-8002 34 bp Feature: domain Description: GIIM Note: maturase Location: 800303-800522 bp Feature: domain Description: GIIM Note: maturase Location: 800303-80052 2 bp Feature: gene Location: 801383-801928 bp Feature: domain Description: ROK_glcA_fam Location: 801401-801908 bp Feature: domain Description: ROK_glcA_fam Location: 801401-801908 bp Feature: gene Location: 801925-802134 bp Feature: domain Description: YqgQ Location: 801928-802126 bp Feature: domain Description: YqgQ Location: 80192 8-802 12 6 bp Feature: gene Location: 888680-888979 bp Feature: gene Location: 889049-889858 bp Feature: gene Location: 889992-891842 bp Feature: RT Description: RVT_N Location: 890229-890472 bp Feature: RT Description: RVT_N Location: 8902 2 9-890472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 890517-891165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 890517-891165 bp Feature: domain Description: GIIM Note: maturase Location: 891222-891450 bp Feature: domain Description: GIIM Note: maturase Location: 8912 2 2 -891450 bp Feature: gene Location: 892210-898206 bp Feature: domain Description: N6_Mtase Location: 894220-894811 bp Feature: domain Description: N6_Mtase Location: 8942 2 0-894811 bp Feature: domain Description: COG4646 Location: 895402-897709 bp Feature: domain Description: COG4646 Location: 895402 -897709 bp Feature: domain Description: KOG0390 Location: 897976-898177 bp Feature: domain Description: KOG0390 Location: 897976-898177 bp Feature: gene Location: 898256-898807 bp Feature: gene Location: 913898-916702 bp Feature: domain Description: Peptidase_M23 Location: 915344-915548 bp Feature: domain Description: Peptidase_M2 3 Location: 915344-915548 bp Feature: domain Description: Phage_lysozyme2 Location: 915701-916211 bp Feature: domain Description: Phage_lysozyme2 Location: 915701-9162 11 bp Feature: domain Description: PRK08581 Location: 916328-916661 bp Feature: domain Description: PRK08581 Location: 91632 8-916661 bp Feature: gene Location: 916699-917739 bp Feature: domain Description: TraC-F-type Location: 916864-917560 bp Feature: domain Description: TraC-F-type Location: 916864-917560 bp Feature: gene Location: 917672-919378 bp Feature: RT Description: RVT_N Location: 917777-918017 bp Feature: RT Description: RVT_N Location: 917777-918017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 918065-918725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 918065-91872 5 bp Feature: domain Description: GIIM Note: maturase Location: 918794-919013 bp Feature: domain Description: GIIM Note: maturase Location: 918794-919013 bp Feature: gene Location: 919874-921361 bp Feature: domain Description: TraC-F-type Location: 920657-921047 bp Feature: domain Description: TraC-F-type Location: 92 0657-92 1047 bp Feature: gene Location: 921318-921671 bp Feature: domain Description: PrgI Location: 921330-921585 bp Feature: domain Description: PrgI Location: 92 1330-92 1585 bp Feature: gene Location: 1021048-1022349 bp Feature: domain Description: CelB Location: 1021054-1022335 bp Feature: domain Description: CelB Location: 102 1054-102 2 335 bp Feature: gene Location: 1022351-1022671 bp Feature: domain Description: CelA Location: 1022354-1022651 bp Feature: domain Description: CelA Location: 102 2 354-102 2 651 bp Feature: gene Location: 1023302-1025008 bp Feature: RT Description: RVT_N Location: 1023407-1023647 bp Feature: RT Description: RVT_N Location: 102 3407-102 3647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1023695-1024355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 3695-102 4355 bp Feature: domain Description: GIIM Note: maturase Location: 1024424-1024643 bp Feature: domain Description: GIIM Note: maturase Location: 102 442 4-102 4643 bp Feature: gene Location: 1025080-1025322 bp Feature: domain Description: CelC Location: 1025098-1025308 bp Feature: domain Description: CelC Location: 102 5098-102 5308 bp Feature: gene Location: 1025526-1026515 bp Feature: domain Description: DeoR Location: 1025535-1026477 bp Feature: domain Description: DeoR Location: 102 5535-102 6477 bp Feature: gene Location: 1110990-1113653 bp Feature: domain Description: Peptidase_M23 Location: 1112226-1112433 bp Feature: domain Description: Peptidase_M2 3 Location: 1112 2 2 6-1112 433 bp Feature: domain Description: Phage_lysozyme2 Location: 1112664-1113183 bp Feature: domain Description: Phage_lysozyme2 Location: 1112 664-1113183 bp Feature: domain Description: PRK08581 Location: 1113300-1113594 bp Feature: domain Description: PRK08581 Location: 1113300-1113594 bp Feature: gene Location: 1113711-1114766 bp Feature: domain Description: TraC-F-type Location: 1113891-1114596 bp Feature: domain Description: TraC-F-type Location: 1113891-1114596 bp Feature: gene Location: 1114699-1116405 bp Feature: RT Description: RVT_N Location: 1114804-1115044 bp Feature: RT Description: RVT_N Location: 1114804-1115044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1115092-1115752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1115092 -1115752 bp Feature: domain Description: GIIM Note: maturase Location: 1115821-1116040 bp Feature: domain Description: GIIM Note: maturase Location: 111582 1-1116040 bp Feature: gene Location: 1116901-1118418 bp Feature: domain Description: TraC-F-type Location: 1117252-1118323 bp Feature: domain Description: TraC-F-type Location: 11172 52 -111832 3 bp Feature: gene Location: 1118363-1118719 bp Feature: domain Description: PrgI Location: 1118393-1118618 bp Feature: domain Description: PrgI Location: 1118393-1118618 bp Feature: gene Location: 1323521-1324213 bp Feature: domain Description: PhoE Location: 1323530-1324190 bp Feature: domain Description: PhoE Location: 132 3530-132 4190 bp Feature: gene Location: 1324336-1324815 bp Feature: domain Description: PRK08295 Location: 1324348-1324576 bp Feature: domain Description: PRK082 95 Location: 132 4348-132 4576 bp Feature: gene Location: 1325031-1326341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1325268-1325883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132 52 68-132 5883 bp Feature: domain Description: GIIM Note: maturase Location: 1325937-1326153 bp Feature: domain Description: GIIM Note: maturase Location: 132 5937-132 6153 bp Feature: gene Location: 1326872-1327291 bp Feature: domain Description: DUF2992 Location: 1326881-1327289 bp Feature: domain Description: DUF2 992 Location: 132 6881-132 72 89 bp Feature: gene Location: 1327511-1328062 bp Feature: domain Description: NTP_transf_6 Location: 1327571-1328051 bp Feature: domain Description: NTP_transf_6 Location: 132 7571-132 8051 bp Feature: gene Location: 1372674-1373651 bp Feature: domain Description: AXE1 Location: 1372686-1373604 bp Feature: domain Description: AXE1 Location: 1372 686-1373604 bp Feature: gene Location: 1373659-1374468 bp Feature: domain Description: NagC Location: 1373833-1374460 bp Feature: domain Description: NagC Location: 1373833-1374460 bp Feature: gene Location: 1374401-1376107 bp Feature: RT Description: RVT_N Location: 1374506-1374746 bp Feature: RT Description: RVT_N Location: 1374506-1374746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1374794-1375454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1374794-1375454 bp Feature: domain Description: GIIM Note: maturase Location: 1375523-1375742 bp Feature: domain Description: GIIM Note: maturase Location: 137552 3-1375742 bp Feature: gene Location: 1376603-1376851 bp Feature: domain Description: NagC Location: 1376606-1376831 bp Feature: domain Description: NagC Location: 1376606-1376831 bp Feature: gene Location: 1376868-1377785 bp Feature: domain Description: NAL Location: 1376889-1377753 bp Feature: domain Description: NAL Location: 1376889-1377753 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLN02563 (aminoacyl-tRNA ligase), RVT-GII, GIIM (pfam08388), BaeS (COG0642), MurE (COG0769), COG3442 (Glutamine amidotransferase related to the GATase domain of CobQ ), lipoyltrans (TIGR00545), YraQ (COG0701), YcgQ (COG3689), PRK10416 (signal recognition particle-docking protein FtsY; Provisional)
Cof (COG0561), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), PRK08581 (amidase domain-containing protein), TraC-F-type (TIGR02746), RVT_N (pfam13655), PrgI (pfam12666), PRK05764 (aspartate aminotransferase; Provisional), PRK07246 (bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated), PRK08643 ((S)-acetoin forming diacetyl reductase)
RHOD (smart00450), ROK_glcA_fam (TIGR00744), YqgQ (COG4483), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG0390 (KOG0390, DNA repair protein, SNF2 family ), CelB (COG1455), CelA (TIGR03030), CelC (COG1447), DeoR (COG2390)
PhoE (COG0406), PRK08295 (RNA polymerase sporulation sigma factor SigH), DUF2992 (pfam11208), NTP_transf_6 (pfam06042), AXE1 (pfam05448), NagC (COG1940), NAL (cd00954)