myRT

myRT report for GCA_002735565.1_ASM273556v1

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Seq: PDYF01000007.1 Pseudobutyrivibrio ruminis strain JK626 contig000007, whole genome shotgun sequence (226033 bp)
Overview 1 RT 1: 99730-102579 bp Neighborhood of RT #1 [99730, 102579] Phage_holin_4_1 RVT-DGRs Feature: gene Location: 99730-100257 bp Feature: domain Description: Phage_holin_4_1 Location: 99832-100183 bp Feature: domain Description: Phage_holin_4_1 Location: 99832-1 001 83 bp Feature: gene Location: 100400-100651 bp Feature: gene Location: 100664-101851 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 100859-101576 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 00859-1 01 576 bp Feature: gene Location: 101952-102110 bp Feature: gene Location: 102112-102579 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: PDYF01000011.1 Pseudobutyrivibrio ruminis strain JK626 contig000011, whole genome shotgun sequence (586649 bp)
Overview 1 RT 1: 486973-491974 bp Neighborhood of RT #1 [486973, 492054] Maff2 RVT-GII HNHc Maff2 nitrilase Feature: gene Location: 486973-487839 bp Feature: gene Location: 487935-488066 bp Feature: domain Description: Maff2 Location: 487974-488064 bp Feature: domain Description: Maff2 Location: 487974-488064 bp Feature: gene Location: 488179-490068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 488512-489250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 488512 -4892 50 bp Feature: domain Description: HNHc Note: nucleases Location: 489784-489949 bp Feature: domain Description: HNHc Note: nucleases Location: 489784-489949 bp Feature: gene Location: 490816-490947 bp Feature: domain Description: Maff2 Location: 490819-490933 bp Feature: domain Description: Maff2 Location: 490819-490933 bp Feature: gene Location: 491212-492054 bp Feature: domain Description: nitrilase Location: 491227-491974 bp Feature: domain Description: nitrilase Location: 4912 2 7-491974 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Maff2 (pfam12750), RVT-GII, HNHc (smart00507), nitrilase (cl11424)

Seq: PDYF01000032.1 Pseudobutyrivibrio ruminis strain JK626 contig000032, whole genome shotgun sequence (1860 bp)
Overview 1 RT 1: 493-1600 bp Neighborhood of RT #1 [493, 1776] RVT-GII GIIM Feature: gene Location: 493-1776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 703-1318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 703 -13 18 bp Feature: domain Description: GIIM Note: maturase Location: 1378-1600 bp Feature: domain Description: GIIM Note: maturase Location: 13 78-1600 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)