myRT

myRT report for GCA_002736735.1_ASM273673v1

Download annotations/find similar RTs

Seq: PEDQ01000110.1 Escherichia coli strain ICBECG2 NL20_S20_L004_R1_001__paired__contig_110, whole genome shotgun sequence (3498 bp)
Overview 1 RT 1: 74-3498 bp Neighborhood of RT #1 [74, 3497] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 74-400 bp Feature: domain Description: InsE Location: 77-398 bp Feature: domain Description: InsE Location: 77-398 bp Feature: gene Location: 400-879 bp Feature: domain Description: PHA02517 Location: 460-814 bp Feature: domain Description: PHA0251 7 Location: 460-81 4 bp Feature: gene Location: 1471-2994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1744-2476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 744-2476 bp Feature: domain Description: GIIM Note: maturase Location: 2551-2749 bp Feature: domain Description: GIIM Note: maturase Location: 2551 -2749 bp Feature: gene Location: 3171-3497 bp Feature: domain Description: PHA02517 Location: 3174-3498 bp Feature: domain Description: PHA0251 7 Location: 31 74-3498 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: PEDQ01000015.1 Escherichia coli strain ICBECG2 NL20_S20_L004_R1_001__paired__contig_15, whole genome shotgun sequence (80285 bp)
Overview 1 RT 1: 35136-39018 bp Neighborhood of RT #1 [35136, 39023] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 35136-35594 bp Feature: domain Description: dut Location: 35142-35589 bp Feature: domain Description: dut Location: 35142 -35589 bp Feature: gene Location: 35701-36297 bp Feature: domain Description: slmA Location: 35707-36283 bp Feature: domain Description: slmA Location: 35707-362 83 bp Feature: gene Location: 36343-37302 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36478-37027 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36478-3702 7 bp Feature: gene Location: 37600-38256 bp Feature: domain Description: pyrE Location: 37618-38251 bp Feature: domain Description: pyrE Location: 37618-382 51 bp Feature: gene Location: 38307-39023 bp Feature: domain Description: rph Location: 38310-39018 bp Feature: domain Description: rph Location: 38310-39018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: PEDQ01000017.1 Escherichia coli strain ICBECG2 NL20_S20_L004_R1_001__paired__contig_17, whole genome shotgun sequence (76357 bp)
Overview 1 RT 1: 20670-26278 bp Neighborhood of RT #1 [20670, 26283] DUF5405 Phage_GPA RVT-AbiP2 Q Feature: gene Location: 20670-20945 bp Feature: domain Description: DUF5405 Location: 20688-20928 bp Feature: domain Description: DUF5405 Location: 20688-20928 bp Feature: gene Location: 20935-23220 bp Feature: domain Description: Phage_GPA Location: 21334-22321 bp Feature: domain Description: Phage_GPA Location: 213 3 4-223 21 bp Feature: gene Location: 23324-25036 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 23906-24359 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 23 906-243 59 bp Feature: gene Location: 25049-25210 bp Feature: gene Location: 25249-26283 bp Feature: domain Description: Q Location: 25252-26278 bp Feature: domain Description: Q Location: 25252-26278 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5405 (pfam17399), Phage_GPA (pfam05840), RVT-AbiP2, Q (PHA02536)

Seq: PEDQ01000063.1 Escherichia coli strain ICBECG2 NL20_S20_L004_R1_001__paired__contig_63, whole genome shotgun sequence (31984 bp)
Overview 1 RT 1: 5578-9578 bp Neighborhood of RT #1 [5578, 9586] DcuC RVT-GII Asparaginase_2 Feature: gene Location: 5578-6939 bp Feature: domain Description: DcuC Location: 5581-6913 bp Feature: domain Description: DcuC Location: 5581-6913 bp Feature: gene Location: 6992-7363 bp Feature: gene Location: 7585-8031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7891-7993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7891-7993 bp Feature: gene Location: 8079-8228 bp Feature: gene Location: 8555-9586 bp Feature: domain Description: Asparaginase_2 Location: 8645-9578 bp Feature: domain Description: Asparaginase_2 Location: 864 5-9578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112)