myRT

myRT report for GCA_002737025.1_ASM273702v1

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Seq: PDMZ01000012.1 Vibrio splendidus strain DSM 19640 VSPL_contig000012, whole genome shotgun sequence (159838 bp)
Overview 1 RT 1: 340-5868 bp Neighborhood of RT #1 [340, 5868] NERD SWIM_PBPRA1643 RVT-Retrons Trypsin_2 Feature: gene Location: 340-2481 bp Feature: domain Description: NERD Location: 1231-1501 bp Feature: domain Description: NERD Location: 1 231 -1 501 bp Feature: domain Description: SWIM_PBPRA1643 Location: 2371-2476 bp Feature: domain Description: SWIM_PBPRA1 643 Location: 2371 -2476 bp Feature: gene Location: 2827-4518 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2959-3562 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2959-3562 bp Feature: domain Description: Trypsin_2 Location: 3955-4387 bp Feature: domain Description: Trypsin_2 Location: 3955-4387 bp Feature: gene Location: 4844-4987 bp Feature: gene Location: 5458-5868 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Trypsin_2 (pfam13365), NERD (pfam08378), SWIM_PBPRA1643 (TIGR04102)

Seq: PDMZ01000016.1 Vibrio splendidus strain DSM 19640 VSPL_contig000016, whole genome shotgun sequence (119608 bp)
Overview 1 RT 1: 11319-15680 bp Neighborhood of RT #1 [11319, 15682] RVT-Retrons PRK06084 Feature: gene Location: 11319-11960 bp Feature: gene Location: 12468-12719 bp Feature: gene Location: 13010-13984 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13151-13712 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13151-13712 bp Feature: gene Location: 14111-14302 bp Feature: gene Location: 14414-15682 bp Feature: domain Description: PRK06084 Location: 14417-15680 bp Feature: domain Description: PRK06084 Location: 14417-15680 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK06084 (bifunctional O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase)

Seq: PDMZ01000049.1 Vibrio splendidus strain DSM 19640 VSPL_contig000049, whole genome shotgun sequence (2164 bp)
Overview 1 RT 1: 113-1520 bp Neighborhood of RT #1 [113, 1744] RVT_N RVT-GII GIIM Feature: gene Location: 113-1744 bp Feature: RT Description: RVT_N Location: 320-563 bp Feature: RT Description: RVT_N Location: 3 20-563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 608-1235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 608-123 5 bp Feature: domain Description: GIIM Note: maturase Location: 1295-1520 bp Feature: domain Description: GIIM Note: maturase Location: 1295-1520 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)