myRT

myRT report for GCA_002738525.1_ClPS15

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Seq: PEHP01000143.1 Pseudomonas syringae pv. actinidiae strain Cl-PS-15 ClPS15_contig_143, whole genome shotgun sequence (1874 bp)
Overview 1 RT 1: 422-1655 bp Neighborhood of RT #1 [422, 1789] RVT-GII GIIM Feature: gene Location: 422-1789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 755-1370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 755-1 370 bp Feature: domain Description: GIIM Note: maturase Location: 1427-1655 bp Feature: domain Description: GIIM Note: maturase Location: 1 427-1 655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PEHP01000203.1 Pseudomonas syringae pv. actinidiae strain Cl-PS-15 ClPS15_contig_203, whole genome shotgun sequence (1826 bp)
Overview 1 RT 1: 3-1823 bp Neighborhood of RT #1 [3, 1823] RVT-GII GIIM Feature: gene Location: 3-1286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 246-861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 46-861 bp Feature: domain Description: GIIM Note: maturase Location: 906-1116 bp Feature: domain Description: GIIM Note: maturase Location: 906-1116 bp Feature: gene Location: 1509-1823 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PEHP01000022.1 Pseudomonas syringae pv. actinidiae strain Cl-PS-15 ClPS15_contig_22, whole genome shotgun sequence (37047 bp)
Overview 1 RT 1: 29957-35893 bp Neighborhood of RT #1 [29957, 35928] modC_ABC Top1 RVT-GII Intron_maturas2 HNHc DUF2625 Feature: gene Location: 29957-31045 bp Feature: domain Description: modC_ABC Location: 29972-31037 bp Feature: domain Description: modC_ABC Location: 29972-3 103 7 bp Feature: gene Location: 31134-32189 bp Feature: domain Description: Top1 Location: 31167-32181 bp Feature: domain Description: Top1 Location: 3 1167-3 2181 bp Feature: gene Location: 33020-34855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33281-34094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 281-3 4094 bp Feature: domain Description: Intron_maturas2 Location: 34190-34505 bp Feature: domain Description: Intron_maturas2 Location: 3 4190-3 4505 bp Feature: domain Description: HNHc Note: nucleases Location: 34628-34793 bp Feature: domain Description: HNHc Note: nucleases Location: 3 4628-3 4793 bp Feature: gene Location: 35095-35286 bp Feature: gene Location: 35293-35928 bp Feature: domain Description: DUF2625 Location: 35305-35893 bp Feature: domain Description: DUF2625 Location: 3 53 05-3 5893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT modC_ABC (TIGR02142), Top1 (COG3569), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF2625 (pfam10946)

Seq: PEHP01000245.1 Pseudomonas syringae pv. actinidiae strain Cl-PS-15 ClPS15_contig_246, whole genome shotgun sequence (4852 bp)
Overview 1 RT 1: 209-3233 bp Neighborhood of RT #1 [209, 3233] RVT-UG9 UvrD_C Feature: gene Location: 209-1240 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 215-488 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 215-4 88 bp Feature: gene Location: 1338-1928 bp Feature: domain Description: UvrD_C Location: 1662-1857 bp Feature: domain Description: UvrD_C Location: 1662-1857 bp Feature: gene Location: 2289-3233 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, UvrD_C (pfam13361)

Seq: PEHP01000028.1 Pseudomonas syringae pv. actinidiae strain Cl-PS-15 ClPS15_contig_28, whole genome shotgun sequence (48618 bp)
Overview 1 RT 1: 81-5990 bp Neighborhood of RT #1 [81, 5990] COG3666 DDE_Tnp_1_6 RVT-Retrons ComA-like_MBL-fold Feature: gene Location: 81-1304 bp Feature: domain Description: COG3666 Location: 123-564 bp Feature: domain Description: COG3666 Location: 123-5 64 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1041-1263 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1041-1263 bp Feature: gene Location: 1555-1716 bp Feature: gene Location: 1802-3511 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1955-2552 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 195 5 -25 5 2 bp Feature: gene Location: 3955-5373 bp Feature: domain Description: ComA-like_MBL-fold Location: 4504-4990 bp Feature: domain Description: ComA-like_MBL-fold Location: 45 04-4990 bp Feature: gene Location: 5727-5990 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-Retrons, ComA-like_MBL-fold (cd07731)

Seq: PEHP01000076.1 Pseudomonas syringae pv. actinidiae strain Cl-PS-15 ClPS15_contig_76, whole genome shotgun sequence (1936 bp)
Overview 1 RT 1: 80-1934 bp Neighborhood of RT #1 [80, 1934] RVT-GII GIIM Feature: gene Location: 80-1348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284-941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284-941 bp Feature: domain Description: GIIM Note: maturase Location: 1019-1241 bp Feature: domain Description: GIIM Note: maturase Location: 1019-1241 bp Feature: gene Location: 1755-1934 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)