myRT

myRT report for GCA_002741155.1_ASM274115v1

Download annotations/find similar RTs

Seq: CP024293.1 Escherichia coli strain 00-3279 chromosome (5116580 bp)
Overview 1 RT 1: 169794-173178 bp 2 RT 2: 993399-1002450 bp 3 RT 3: 1092751-1096144 bp 4 RT 4: 2067010-2072520 bp 5 RT 5: 4034966-4038575 bp Neighborhood of RT #1 [169794, 173228] PHA02517 RVT-GII GIIM PHA02517 LZ_Tnp_IS66 Neighborhood of RT #2 [993399, 1002461] InsE Tra5 RVT-UG8 INT_Rci_Hp1_C INT_P4_C mutS1 Neighborhood of RT #3 [1092751, 1096144] PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #4 [2067010, 2072520] Prim_Zn_Ribbon COG3378 RVT-Retrons TIR_2 Pox_D5 Neighborhood of RT #5 [4034966, 4038742] InsE PHA02517 RVT-GII GIIM PHA02517 COG2085 Feature: gene Location: 169794-169922 bp Feature: gene Location: 169970-170251 bp Feature: domain Description: PHA02517 Location: 169976-170186 bp Feature: domain Description: PHA0251 7 Location: 1 69976-1 701 86 bp Feature: gene Location: 170843-172366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 171116-171848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 1 1 6-1 71 848 bp Feature: domain Description: GIIM Note: maturase Location: 171923-172121 bp Feature: domain Description: GIIM Note: maturase Location: 1 71 923-1 721 21 bp Feature: gene Location: 172543-172929 bp Feature: domain Description: PHA02517 Location: 172546-172927 bp Feature: domain Description: PHA0251 7 Location: 1 72546-1 72927 bp Feature: gene Location: 172932-173228 bp Feature: domain Description: LZ_Tnp_IS66 Location: 173112-173178 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 731 1 2-1 731 78 bp Feature: gene Location: 993399-993698 bp Feature: domain Description: InsE Location: 993426-993693 bp Feature: domain Description: InsE Location: 993426-993693 bp Feature: gene Location: 993695-994561 bp Feature: domain Description: Tra5 Location: 993806-994556 bp Feature: domain Description: Tra5 Location: 993806-994556 bp Feature: gene Location: 995000-997018 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 995570-996020 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 995570-996020 bp Feature: gene Location: 998274-999734 bp Feature: domain Description: INT_Rci_Hp1_C Location: 998649-998856 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 998649-998856 bp Feature: domain Description: INT_P4_C Location: 999075-999612 bp Feature: domain Description: INT_P4_C Location: 999075-99961 2 bp Feature: gene Location: 999879-1002461 bp Feature: domain Description: mutS1 Location: 999930-1002450 bp Feature: domain Description: mutS1 Location: 999930-1 002450 bp Feature: gene Location: 1092751-1092933 bp Feature: gene Location: 1092951-1093190 bp Feature: domain Description: PHA02517 Location: 1092954-1093125 bp Feature: domain Description: PHA0251 7 Location: 1 092954-1 0931 25 bp Feature: gene Location: 1093782-1095305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1094055-1094787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 094055-1 094787 bp Feature: domain Description: GIIM Note: maturase Location: 1094862-1095060 bp Feature: domain Description: GIIM Note: maturase Location: 1 094862-1 095060 bp Feature: gene Location: 1095434-1095874 bp Feature: domain Description: PHA02517 Location: 1095437-1095845 bp Feature: domain Description: PHA0251 7 Location: 1 095437-1 095845 bp Feature: gene Location: 1095929-1096144 bp Feature: gene Location: 2067010-2069343 bp Feature: domain Description: Prim_Zn_Ribbon Location: 2067100-2067208 bp Feature: domain Description: Prim_Zn_Ribbon Location: 20671 00-2067208 bp Feature: domain Description: COG3378 Location: 2067820-2069332 bp Feature: domain Description: COG3378 Location: 2067820-2069332 bp Feature: gene Location: 2069620-2069754 bp Feature: gene Location: 2069930-2071561 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2070245-2070842 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2070245-2070842 bp Feature: domain Description: TIR_2 Location: 2071166-2071523 bp Feature: domain Description: TIR_2 Location: 2071 1 66-2071 523 bp Feature: gene Location: 2071799-2071951 bp Feature: domain Description: Pox_D5 Location: 2071802-2071925 bp Feature: domain Description: Pox_D5 Location: 2071 802-2071 925 bp Feature: gene Location: 2072338-2072520 bp Feature: gene Location: 4034966-4035238 bp Feature: domain Description: InsE Location: 4034975-4035224 bp Feature: domain Description: InsE Location: 4034975-4035224 bp Feature: gene Location: 4035294-4035719 bp Feature: domain Description: PHA02517 Location: 4035318-4035654 bp Feature: domain Description: PHA0251 7 Location: 403531 8-4035654 bp Feature: gene Location: 4036311-4037834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4036584-4037316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4036584-403731 6 bp Feature: domain Description: GIIM Note: maturase Location: 4037391-4037589 bp Feature: domain Description: GIIM Note: maturase Location: 4037391 -4037589 bp Feature: gene Location: 4037999-4038163 bp Feature: domain Description: PHA02517 Location: 4038002-4038092 bp Feature: domain Description: PHA0251 7 Location: 4038002-4038092 bp Feature: gene Location: 4038329-4038742 bp Feature: domain Description: COG2085 Location: 4038428-4038575 bp Feature: domain Description: COG2085 Location: 4038428-4038575 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), InsE (COG2963), Tra5 (COG2801), RVT-UG8, INT_Rci_Hp1_C (cd00796), INT_P4_C (cd00801), mutS1 (TIGR01070)
Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), RVT-Retrons, TIR_2 (pfam13676), Pox_D5 (pfam03288), COG2085 (Predicted dinucleotide-binding enzyme )

Seq: CP024294.1 Escherichia coli strain 00-3279 plasmid unnamed1, complete sequence (101907 bp)
Overview 1 RT 1: 20436-24226 bp 2 RT 2: 94974-99126 bp Neighborhood of RT #1 [20436, 24291] PHA02517 PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [94974, 99126] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 20436-21254 bp Feature: domain Description: PHA02517 Location: 20460-21249 bp Feature: domain Description: PHA02 517 Location: 2 0460-2 12 49 bp Feature: gene Location: 21330-21776 bp Feature: domain Description: PHA02517 Location: 21333-21771 bp Feature: domain Description: PHA02 517 Location: 2 1333-2 1771 bp Feature: gene Location: 21895-23418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22168-22900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 168-2 2 900 bp Feature: domain Description: GIIM Note: maturase Location: 22975-23173 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 975-2 3173 bp Feature: gene Location: 23372-23797 bp Feature: gene Location: 24010-24291 bp Feature: domain Description: PHA02517 Location: 24016-24226 bp Feature: domain Description: PHA02 517 Location: 2 4016-2 42 2 6 bp Feature: gene Location: 94974-95300 bp Feature: domain Description: InsE Location: 94977-95298 bp Feature: domain Description: InsE Location: 94977-952 98 bp Feature: gene Location: 95300-95779 bp Feature: domain Description: PHA02517 Location: 95360-95714 bp Feature: domain Description: PHA02 517 Location: 95360-95714 bp Feature: gene Location: 96371-97894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96644-97376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96644-97376 bp Feature: domain Description: GIIM Note: maturase Location: 97451-97649 bp Feature: domain Description: GIIM Note: maturase Location: 97451-97649 bp Feature: gene Location: 98011-98457 bp Feature: domain Description: PHA02517 Location: 98014-98455 bp Feature: domain Description: PHA02 517 Location: 98014-98455 bp Feature: gene Location: 98500-99126 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: CP024295.1 Escherichia coli strain 00-3279 plasmid unnamed2, complete sequence (103995 bp)
Overview 1 RT 1: 67744-71230 bp Neighborhood of RT #1 [67744, 71295] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 67744-67968 bp Feature: gene Location: 68138-68584 bp Feature: domain Description: PHA02517 Location: 68141-68582 bp Feature: domain Description: PHA02517 Location: 68141-68582 bp Feature: gene Location: 68701-70224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68974-69706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68974-69706 bp Feature: domain Description: GIIM Note: maturase Location: 69781-69979 bp Feature: domain Description: GIIM Note: maturase Location: 69781-69979 bp Feature: gene Location: 70178-70603 bp Feature: gene Location: 70816-71295 bp Feature: domain Description: PHA02517 Location: 70876-71230 bp Feature: domain Description: PHA02517 Location: 70876-7123 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)