myRT

myRT report for GCA_002741985.1_ASM274198v1

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Seq: APHW01000030.1 Vibrio rotiferianus CAIM 577 = LMG 21460 strain CAIM 577 30contig012, whole genome shotgun sequence (118334 bp)
Overview 1 RT 1: 74798-81177 bp Neighborhood of RT #1 [74798, 81179] DUF2188 RVT_N RVT-GII GIIM HNHc groEL groES Feature: gene Location: 74798-75361 bp Feature: gene Location: 75959-76180 bp Ori: PIB15869.1 Feature: domain Description: DUF2188 Location: 75974-76151 bp Feature: domain Description: DUF21 88 Location: 75974-761 51 bp Feature: gene Location: 76245-77921 bp Ori: PIB15870.1 Feature: domain Description: RVT_N Location: 76296-76539 bp Feature: domain Description: RVT_N Location: 76296-76539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76584-77229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76584-77229 bp Feature: domain Description: GIIM Note: maturase Location: 77280-77514 bp Feature: domain Description: GIIM Note: maturase Location: 77280-7751 4 bp Feature: domain Description: HNHc Note: nucleases Location: 77733-77892 bp Feature: domain Description: HNHc Note: nucleases Location: 77733-77892 bp Feature: gene Location: 79166-80812 bp Ori: PIB15871.1 Gene: groEL Feature: domain Description: groEL Location: 79172-80789 bp Feature: domain Description: groEL Location: 791 72-80789 bp Feature: gene Location: 80889-81179 bp Ori: PIB15872.1 Gene: groES Feature: domain Description: groES Location: 80892-81177 bp Feature: domain Description: groES Location: 80892-81 1 77 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2188 (pfam09954), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852), groES (PRK14533)

Seq: APHW01000104.1 Vibrio rotiferianus CAIM 577 = LMG 21460 strain CAIM 577 44contig017, whole genome shotgun sequence (305545 bp)
Overview 1 RT 1: 147241-150806 bp Neighborhood of RT #1 [147241, 150808] Cas2_I_II_III Cas1_I-II-III RVT-CRISPR Cas_Cas1 zf-ribbon_3 Feature: gene Location: 147241-147525 bp Ori: PIB13129.1 Feature: domain Description: Cas2_I_II_III Location: 147259-147481 bp Feature: domain Description: Cas2 _I_II_III Location: 1472 59-147481 bp Feature: gene Location: 147525-148106 bp Ori: PIB13130.1 Feature: domain Description: Cas1_I-II-III Location: 147534-148065 bp Feature: domain Description: Cas1_I-II-III Location: 147534-148065 bp Feature: gene Location: 148126-149598 bp Ori: PIB13131.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 148324-148933 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 14832 4-148933 bp Feature: domain Description: Cas_Cas1 Location: 149221-149530 bp Feature: domain Description: Cas_Cas1 Location: 1492 2 1-149530 bp Feature: gene Location: 149648-150451 bp Feature: gene Location: 150542-150808 bp Ori: PIB13133.1 Feature: domain Description: zf-ribbon_3 Location: 150737-150806 bp Feature: domain Description: zf-ribbon_3 Location: 150737-150806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Cas1_I-II-III (cl00656), RVT-CRISPR, Cas_Cas1 (pfam01867), zf-ribbon_3 (pfam13248)