myRT

myRT report for GCA_002742145.1_ASM274214v1

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Seq: PEHG01000179.1 Pseudomonas syringae pv. actinidiae strain Cl-PS-12 Pseudomonas2_S2_L001_R1_001_trimmed_contig_179, whole genome shotgun sequence (876 bp)
Overview 1 RT 1: 1-876 bp Neighborhood of RT #1 [1, 876] RVT-GII GIIM Feature: gene Location: 1-702 bp Ori: PIB83381.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-283 bp Feature: domain Description: GIIM Note: maturase Location: 340-568 bp Feature: domain Description: GIIM Note: maturase Location: 340-568 bp Feature: gene Location: 790-876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PEHG01000121.1 Pseudomonas syringae pv. actinidiae strain Cl-PS-12 Pseudomonas2_S2_L001_R1_001_trimmed_contig_121, whole genome shotgun sequence (1607 bp)
Overview 1 RT 1: 1-1443 bp Neighborhood of RT #1 [1, 1550] RVT-GII GIIM Feature: gene Location: 1-285 bp Feature: gene Location: 282-1550 bp Ori: PIB84680.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 486-1143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 486-1143 bp Feature: domain Description: GIIM Note: maturase Location: 1221-1443 bp Feature: domain Description: GIIM Note: maturase Location: 12 2 1-1443 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PEHG01000200.1 Pseudomonas syringae pv. actinidiae strain Cl-PS-12 Pseudomonas2_S2_L001_R1_001_trimmed_contig_201, whole genome shotgun sequence (1802 bp)
Overview 1 RT 1: 591-1701 bp Neighborhood of RT #1 [591, 1802] RVT-GII GIIM Feature: gene Location: 591-1802 bp Ori: PIB83181.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 831-1446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83 1-1446 bp Feature: domain Description: GIIM Note: maturase Location: 1491-1701 bp Feature: domain Description: GIIM Note: maturase Location: 1491-1701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PEHG01000111.1 Pseudomonas syringae pv. actinidiae strain Cl-PS-12 Pseudomonas2_S2_L001_R1_001_trimmed_contig_111, whole genome shotgun sequence (3560 bp)
Overview 1 RT 1: 2539-3176 bp Neighborhood of RT #1 [2539, 3189] IstB_IS21 RVT-GII Feature: gene Location: 2539-2652 bp Feature: gene Location: 2644-2985 bp Ori: PIB85790.1 Feature: domain Description: IstB_IS21 Location: 2650-2917 bp Feature: domain Description: IstB_IS21 Location: 2650-2917 bp Feature: gene Location: 2984-3189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3008-3176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3008-3176 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IstB_IS21 (pfam01695), RVT-GII

Seq: PEHG01000051.1 Pseudomonas syringae pv. actinidiae strain Cl-PS-12 Pseudomonas2_S2_L001_R1_001_trimmed_contig_51, whole genome shotgun sequence (1131 bp)
Overview 1 RT 1: 1-978 bp Neighborhood of RT #1 [1, 978] RVT-GII Feature: gene Location: 1-696 bp Ori: PIB87571.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-697 bp Feature: gene Location: 698-978 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PEHG01000084.1 Pseudomonas syringae pv. actinidiae strain Cl-PS-12 Pseudomonas2_S2_L001_R1_001_trimmed_contig_84, whole genome shotgun sequence (37024 bp)
Overview 1 RT 1: 1170-7133 bp Neighborhood of RT #1 [1170, 7141] DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 1170-1805 bp Ori: PIB86786.1 Feature: domain Description: DUF2625 Location: 1182-1770 bp Feature: domain Description: DUF26 25 Location: 1182-1770 bp Feature: gene Location: 1812-2003 bp Feature: gene Location: 2243-4078 bp Ori: PIB86788.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2504-3317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2504-3317 bp Feature: domain Description: Intron_maturas2 Location: 3413-3728 bp Feature: domain Description: Intron_maturas2 Location: 3413-3728 bp Feature: domain Description: HNHc Note: nucleases Location: 3851-4016 bp Feature: domain Description: HNHc Note: nucleases Location: 3851-4016 bp Feature: gene Location: 4909-5964 bp Ori: PIB86789.1 Feature: domain Description: Top1 Location: 4942-5956 bp Feature: domain Description: Top1 Location: 4942-5956 bp Feature: gene Location: 6053-7141 bp Ori: PIB86790.1 Gene: modC Feature: domain Description: modC_ABC Location: 6068-7133 bp Feature: domain Description: modC_ABC Location: 6 06 8-7133 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)

Seq: PEHG01000188.1 Pseudomonas syringae pv. actinidiae strain Cl-PS-12 Pseudomonas2_S2_L001_R1_001_trimmed_contig_188, whole genome shotgun sequence (4808 bp)
Overview 1 RT 1: 126-3258 bp Neighborhood of RT #1 [126, 3258] RVT-UG9 UvrD_C Feature: gene Location: 126-1265 bp Ori: PIB83314.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 129-513 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 129-513 bp Feature: gene Location: 1363-1953 bp Ori: PIB83315.1 Feature: domain Description: UvrD_C Location: 1687-1882 bp Feature: domain Description: UvrD_C Location: 1687 -1882 bp Feature: gene Location: 2314-3258 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, UvrD_C (pfam13361)

Seq: PEHG01000069.1 Pseudomonas syringae pv. actinidiae strain Cl-PS-12 Pseudomonas2_S2_L001_R1_001_trimmed_contig_69, whole genome shotgun sequence (48536 bp)
Overview 1 RT 1: 74-6368 bp Neighborhood of RT #1 [74, 6457] COG3666 DDE_Tnp_1_6 RVT-Retrons ComA-like_MBL-fold trans_reg_C Feature: gene Location: 74-1258 bp Feature: domain Description: COG3666 Location: 116-557 bp Feature: domain Description: COG3666 Location: 116-557 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1034-1241 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1034-1241 bp Feature: gene Location: 1756-3465 bp Ori: PIB87129.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1909-2506 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1909-2506 bp Feature: gene Location: 3909-5327 bp Ori: PIB87130.1 Feature: domain Description: ComA-like_MBL-fold Location: 4458-4944 bp Feature: domain Description: ComA-like_MBL-fold Location: 4458 -4944 bp Feature: gene Location: 6134-6457 bp Ori: PIB87131.1 Feature: domain Description: trans_reg_C Location: 6158-6368 bp Feature: domain Description: trans_reg_C Location: 6158 -6368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-Retrons, ComA-like_MBL-fold (cd07731), trans_reg_C (cd00383)