myRT

myRT report for GCA_002742995.1_ASM274299v1

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Seq: PDYK01000010.1 Sporosarcina sp. P10 contig-150_9, whole genome shotgun sequence (153558 bp)
Overview 1 RT 1: 150347-152864 bp Neighborhood of RT #1 [150347, 152864] EmrE RVT-GII Feature: gene Location: 150347-150667 bp Ori: PIC57326.1 Feature: domain Description: EmrE Location: 150350-150656 bp Feature: domain Description: EmrE Location: 1 50350-1 50656 bp Feature: gene Location: 150785-151015 bp Feature: gene Location: 152010-152477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152208-152478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 52208-1 52478 bp Feature: gene Location: 152459-152596 bp Feature: gene Location: 152736-152864 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EmrE (pfam13536), RVT-GII

Seq: PDYK01000006.1 Sporosarcina sp. P10 contig-150_5, whole genome shotgun sequence (221343 bp)
Overview 1 RT 1: 76553-82457 bp Neighborhood of RT #1 [76553, 82507] YrvD recJ RVT-GII recJ ssDNA-exonuc_C Feature: gene Location: 76553-76912 bp Ori: PIC57913.1 Feature: domain Description: YrvD Location: 76556-76784 bp Feature: domain Description: YrvD Location: 76556-76784 bp Feature: gene Location: 77388-77678 bp Ori: PIC58046.1 Feature: domain Description: recJ Location: 77472-77661 bp Feature: domain Description: recJ Location: 77472 -77661 bp Feature: gene Location: 78388-80271 bp Ori: PIC57914.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78712-79453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78712 -79453 bp Feature: gene Location: 80310-80435 bp Feature: gene Location: 80348-82507 bp Ori: PIC57915.1 Gene: recJ Feature: domain Description: recJ Location: 80441-81848 bp Feature: domain Description: recJ Location: 80441-81848 bp Feature: domain Description: ssDNA-exonuc_C Location: 81866-82457 bp Feature: domain Description: ssDNA-exonuc_C Location: 81866-82 457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YrvD (COG5416), recJ (TIGR00644), RVT-GII, ssDNA-exonuc_C (pfam10141)

Seq: PDYK01000015.1 Sporosarcina sp. P10 contig-150_14, whole genome shotgun sequence (85700 bp)
Overview 1 RT 1: 61728-68147 bp Neighborhood of RT #1 [61728, 68147] Acetyltransf_10 PucG RVT-GII Feature: gene Location: 61728-63338 bp Ori: PIC56717.1 Feature: domain Description: Acetyltransf_10 Location: 61797-62217 bp Feature: domain Description: Acetyltransf_10 Location: 61797-62217 bp Feature: domain Description: PucG Location: 62280-63168 bp Feature: domain Description: PucG Location: 62280-63 168 bp Feature: gene Location: 63464-63907 bp Feature: gene Location: 64444-66240 bp Ori: PIC56719.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64735-65434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6473 5-6543 4 bp Feature: gene Location: 66965-67384 bp Feature: gene Location: 67605-68147 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_10 (pfam13673), PucG (COG0075), RVT-GII

Seq: PDYK01000012.1 Sporosarcina sp. P10 contig-150_11, whole genome shotgun sequence (127293 bp)
Overview 1 RT 1: 1757-8996 bp 2 RT 2: 86677-92984 bp Neighborhood of RT #1 [1757, 9061] PotE RVT-GII PRK07525 HTH_1 PBP2_CysL_like Neighborhood of RT #2 [86677, 93007] ZnF_CHCC RecT RVT-Retrons Trypsin_2 RpsA Feature: gene Location: 1757-1951 bp Feature: gene Location: 2728-4293 bp Ori: PIC56938.1 Feature: domain Description: PotE Location: 2737-4105 bp Feature: domain Description: PotE Location: 2737-4 105 bp Feature: gene Location: 4422-5673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4950-5226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 950-5226 bp Feature: gene Location: 6297-8072 bp Ori: PIC56939.1 Gene: xsc Feature: domain Description: PRK07525 Location: 6342-8049 bp Feature: domain Description: PRK07525 Location: 634 2-804 9 bp Feature: gene Location: 8123-9061 bp Ori: PIC56940.1 Feature: domain Description: HTH_1 Location: 8135-8297 bp Feature: domain Description: HTH_1 Location: 8135-8297 bp Feature: domain Description: PBP2_CysL_like Location: 8402-8996 bp Feature: domain Description: PBP2_CysL_like Location: 84 02-8996 bp Feature: gene Location: 86677-87462 bp Ori: PIC57020.1 Feature: domain Description: ZnF_CHCC Location: 86821-86923 bp Feature: domain Description: ZnF_CHCC Location: 86821-86923 bp Feature: gene Location: 87465-88757 bp Ori: PIC57021.1 Feature: domain Description: RecT Location: 87531-88044 bp Feature: domain Description: RecT Location: 87531-8804 4 bp Feature: gene Location: 89282-91027 bp Ori: PIC57022.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 89456-90050 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 894 56-90050 bp Feature: domain Description: Trypsin_2 Location: 90461-90911 bp Feature: domain Description: Trypsin_2 Location: 904 61-90911 bp Feature: gene Location: 91337-92062 bp Feature: gene Location: 92129-93007 bp Ori: PIC57024.1 Feature: domain Description: RpsA Location: 92255-92984 bp Feature: domain Description: RpsA Location: 92255-92984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PotE (COG0531), RVT-GII, PRK07525 (sulfoacetaldehyde acetyltransferase; Validated), HTH_1 (pfam00126), PBP2_CysL_like (cd08420), ZnF_CHCC (smart00400), RecT (pfam03837), RVT-Retrons, Trypsin_2 (pfam13365), RpsA (COG0539)

Seq: PDYK01000021.1 Sporosarcina sp. P10 contig-150_20, whole genome shotgun sequence (51141 bp)
Overview 1 RT 1: 22468-25799 bp Neighborhood of RT #1 [22468, 25799] RVT-UG2 Feature: gene Location: 22468-22872 bp Feature: gene Location: 23035-23241 bp Feature: gene Location: 23376-24716 bp Ori: PIC56266.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 23577-24396 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 235 77-24396 bp Feature: gene Location: 24897-25076 bp Feature: gene Location: 25593-25799 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2