myRT

myRT report for GCA_002743035.1_ASM274303v1

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Seq: PDYL01000006.1 Sporosarcina sp. P12(2017) strain P12 contig-150_5, whole genome shotgun sequence (184255 bp)
Overview 1 RT 1: 76553-82457 bp Neighborhood of RT #1 [76553, 82507] YrvD recJ RVT-GII recJ ssDNA-exonuc_C Feature: gene Location: 76553-76912 bp Ori: PIC61295.1 Feature: domain Description: YrvD Location: 76556-76784 bp Feature: domain Description: YrvD Location: 76556-76784 bp Feature: gene Location: 77388-77678 bp Ori: PIC61296.1 Feature: domain Description: recJ Location: 77472-77661 bp Feature: domain Description: recJ Location: 77472-77661 bp Feature: gene Location: 78388-80271 bp Ori: PIC61297.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78712-79453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7871 2-79453 bp Feature: gene Location: 80310-80435 bp Feature: gene Location: 80348-82507 bp Ori: PIC61298.1 Gene: recJ Feature: domain Description: recJ Location: 80441-81848 bp Feature: domain Description: recJ Location: 80441 -81 848 bp Feature: domain Description: ssDNA-exonuc_C Location: 81866-82457 bp Feature: domain Description: ssDNA-exonuc_C Location: 81 866-82457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YrvD (COG5416), recJ (TIGR00644), RVT-GII, ssDNA-exonuc_C (pfam10141)

Seq: PDYL01000012.1 Sporosarcina sp. P12(2017) strain P12 contig-150_11, whole genome shotgun sequence (111415 bp)
Overview 1 RT 1: 69997-76304 bp Neighborhood of RT #1 [69997, 76327] ZnF_CHCC RecT RVT-Retrons Trypsin_2 RpsA Feature: gene Location: 69997-70782 bp Ori: PIC60403.1 Feature: domain Description: ZnF_CHCC Location: 70141-70243 bp Feature: domain Description: ZnF_CHCC Location: 70141-702 43 bp Feature: gene Location: 70785-72077 bp Ori: PIC60404.1 Feature: domain Description: RecT Location: 70851-71364 bp Feature: domain Description: RecT Location: 70851-71364 bp Feature: gene Location: 72602-74347 bp Ori: PIC60405.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 72776-73370 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 72 776-73370 bp Feature: domain Description: Trypsin_2 Location: 73781-74231 bp Feature: domain Description: Trypsin_2 Location: 73781-742 31 bp Feature: gene Location: 74657-75382 bp Feature: gene Location: 75449-76327 bp Ori: PIC60407.1 Feature: domain Description: RpsA Location: 75575-76304 bp Feature: domain Description: RpsA Location: 75575-76304 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ZnF_CHCC (smart00400), RecT (pfam03837), RVT-Retrons, Trypsin_2 (pfam13365), RpsA (COG0539)

Seq: PDYL01000017.1 Sporosarcina sp. P12(2017) strain P12 contig-150_16, whole genome shotgun sequence (85676 bp)
Overview 1 RT 1: 61723-68142 bp Neighborhood of RT #1 [61723, 68142] Acetyltransf_10 PucG RVT-GII Feature: gene Location: 61723-63333 bp Ori: PIC59934.1 Feature: domain Description: Acetyltransf_10 Location: 61792-62212 bp Feature: domain Description: Acetyltransf_10 Location: 61792-62212 bp Feature: domain Description: PucG Location: 62275-63163 bp Feature: domain Description: PucG Location: 62275-63 163 bp Feature: gene Location: 63459-63902 bp Feature: gene Location: 64439-66235 bp Ori: PIC59936.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64730-65429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6473 0-65429 bp Feature: gene Location: 66960-67379 bp Feature: gene Location: 67600-68142 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_10 (pfam13673), PucG (COG0075), RVT-GII

Seq: PDYL01000010.1 Sporosarcina sp. P12(2017) strain P12 contig-150_9, whole genome shotgun sequence (153747 bp)
Overview 1 RT 1: 150536-153053 bp Neighborhood of RT #1 [150536, 153053] EmrE RVT-GII Feature: gene Location: 150536-150856 bp Ori: PIC60708.1 Feature: domain Description: EmrE Location: 150539-150845 bp Feature: domain Description: EmrE Location: 150539-15084 5 bp Feature: gene Location: 150974-151204 bp Feature: gene Location: 152199-152666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152397-152667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152397-152667 bp Feature: gene Location: 152648-152785 bp Feature: gene Location: 152925-153053 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EmrE (pfam13536), RVT-GII

Seq: PDYL01000023.1 Sporosarcina sp. P12(2017) strain P12 contig-150_22, whole genome shotgun sequence (51152 bp)
Overview 1 RT 1: 22478-25809 bp Neighborhood of RT #1 [22478, 25809] RVT-UG2 Feature: gene Location: 22478-22882 bp Feature: gene Location: 23045-23251 bp Feature: gene Location: 23386-24726 bp Ori: PIC59510.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 23587-24406 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 235 87-24406 bp Feature: gene Location: 24907-25086 bp Feature: gene Location: 25603-25809 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2

Seq: PDYL01000014.1 Sporosarcina sp. P12(2017) strain P12 contig-150_13, whole genome shotgun sequence (98082 bp)
Overview 1 RT 1: 7619-14923 bp Neighborhood of RT #1 [7619, 14923] HTH_1 PBP2_CysL_like PRK07525 RVT-GII PotE Feature: gene Location: 7619-8557 bp Ori: PIC60143.1 Feature: domain Description: HTH_1 Location: 7631-7793 bp Feature: domain Description: HTH_1 Location: 76 31-7793 bp Feature: domain Description: PBP2_CysL_like Location: 7898-8492 bp Feature: domain Description: PBP2_CysL_like Location: 7898-8492 bp Feature: gene Location: 8608-10383 bp Ori: PIC60144.1 Gene: xsc Feature: domain Description: PRK07525 Location: 8653-10360 bp Feature: domain Description: PRK07525 Location: 86 53-1036 0 bp Feature: gene Location: 11007-12258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11535-11811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11535-11811 bp Feature: gene Location: 12387-13952 bp Ori: PIC60145.1 Feature: domain Description: PotE Location: 12396-13764 bp Feature: domain Description: PotE Location: 12396 -1376 4 bp Feature: gene Location: 14729-14923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_1 (pfam00126), PBP2_CysL_like (cd08420), PRK07525 (sulfoacetaldehyde acetyltransferase; Validated), RVT-GII, PotE (COG0531)