myRT

myRT report for GCA_002746645.1_ASM274664v1

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Seq: PDPU01000047.1 Gammaproteobacteria bacterium isolate DOLZORAL124_62_170 DolZOral124_scaffold_5003, whole genome shotgun sequence (17367 bp)
Overview 1 RT 1: 1-4560 bp Neighborhood of RT #1 [1, 5003] PHA02517 RVT-GII GIIM InsE TmcA Feature: gene Location: 1-658 bp Ori: PID59391.1 Feature: domain Description: PHA02517 Location: 67-658 bp Feature: domain Description: PHA0251 7 Location: 67-658 bp Feature: gene Location: 771-2165 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1125-1779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 25-1 779 bp Feature: domain Description: GIIM Note: maturase Location: 1863-2082 bp Feature: domain Description: GIIM Note: maturase Location: 1 863-2082 bp Feature: gene Location: 2538-2825 bp Ori: PID59392.1 Feature: domain Description: InsE Location: 2550-2820 bp Feature: domain Description: InsE Location: 2550-2820 bp Feature: gene Location: 2895-5003 bp Ori: PID59393.1 Feature: domain Description: TmcA Location: 3057-4560 bp Feature: domain Description: TmcA Location: 3057-4560 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), TmcA (COG1444)

Seq: PDPU01000041.1 Gammaproteobacteria bacterium isolate DOLZORAL124_62_170 DolZOral124_scaffold_675, whole genome shotgun sequence (54941 bp)
Overview 1 RT 1: 1-7706 bp Neighborhood of RT #1 [1, 7706] PHA02517 Fasciclin Fasciclin RVT-GII GIIM PRK08292 Feature: gene Location: 1-309 bp Ori: PID59994.1 Feature: domain Description: PHA02517 Location: 4-271 bp Feature: domain Description: PHA02 517 Location: 4-2 71 bp Feature: gene Location: 897-2663 bp Ori: PID59995.1 Feature: domain Description: Fasciclin Location: 1164-1488 bp Feature: domain Description: Fasciclin Location: 1164-1488 bp Feature: domain Description: Fasciclin Location: 2334-2634 bp Feature: domain Description: Fasciclin Location: 2 334-2 634 bp Feature: gene Location: 3367-4589 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3559-4174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3559-4174 bp Feature: domain Description: GIIM Note: maturase Location: 4222-4411 bp Feature: domain Description: GIIM Note: maturase Location: 42 2 2 -4411 bp Feature: gene Location: 4737-6215 bp Ori: PID59996.1 Feature: domain Description: PRK08292 Location: 4776-6213 bp Feature: domain Description: PRK082 92 Location: 4776-62 13 bp Feature: gene Location: 6297-7706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), Fasciclin (pfam02469), RVT-GII, GIIM (pfam08388), PRK08292 (AMP nucleosidase; Provisional)

Seq: PDPU01000037.1 Gammaproteobacteria bacterium isolate DOLZORAL124_62_170 DolZOral124_scaffold_508, whole genome shotgun sequence (62738 bp)
Overview 1 RT 1: 92-6786 bp Neighborhood of RT #1 [92, 6830] PRK08181 cas2 RVT-CRISPR Cas1_I-II-III DUF5051 DUF4868 Feature: gene Location: 92-424 bp Feature: domain Description: PRK08181 Location: 98-410 bp Feature: domain Description: PRK08181 Location: 98-410 bp Feature: gene Location: 1582-1860 bp Ori: PID60450.1 Gene: cas2 Feature: domain Description: cas2 Location: 1597-1837 bp Feature: domain Description: cas2 Location: 1597-183 7 bp Feature: gene Location: 1928-5017 bp Ori: PID60451.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3185-3782 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3 185-3 782 bp Feature: domain Description: Cas1_I-II-III Location: 4088-4973 bp Feature: domain Description: Cas1_I-II-III Location: 4088-4973 bp Feature: gene Location: 5014-5631 bp Ori: PID60452.1 Feature: domain Description: DUF5051 Location: 5065-5581 bp Feature: domain Description: DUF5051 Location: 5065-5581 bp Feature: gene Location: 5964-6830 bp Ori: PID60453.1 Feature: domain Description: DUF4868 Location: 6246-6786 bp Feature: domain Description: DUF4868 Location: 6246-6786 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08181 (transposase; Validated), cas2 (TIGR01573), RVT-CRISPR, Cas1_I-II-III (cl00656), DUF5051 (pfam16473), DUF4868 (pfam16162)