myRT

myRT report for GCA_002748425.1_ASM274842v1

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Seq: PDSJ01000018.1 Candidate division KSB3 bacterium isolate DOLJORAL78_50_49 DolJOral78_scaffold_65, whole genome shotgun sequence (136082 bp)
Overview 1 RT 1: 133301-135562 bp Neighborhood of RT #1 [133301, 135852] Cas2_I_II_III RVT_N RVT-GII GIIM Feature: gene Location: 133301-133942 bp Feature: gene Location: 133989-134264 bp Feature: domain Description: Cas2_I_II_III Location: 134001-134226 bp Feature: domain Description: Cas2_I_II_III Location: 1 34001 -1 34226 bp Feature: gene Location: 134344-135852 bp Feature: RT Description: RVT_N Location: 134359-134602 bp Feature: RT Description: RVT_N Location: 1 34359-1 34602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134647-135277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 34647-1 35277 bp Feature: domain Description: GIIM Note: maturase Location: 135331-135562 bp Feature: domain Description: GIIM Note: maturase Location: 1 35331 -1 35562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PDSJ01000041.1 Candidate division KSB3 bacterium isolate DOLJORAL78_50_49 DolJOral78_scaffold_28950, whole genome shotgun sequence (6158 bp)
Overview 1 RT 1: 1046-5822 bp Neighborhood of RT #1 [1046, 5822] Peptidase_C14 YfmG Avd_like RVT-DGRs KOG1546 DUF4384 Feature: gene Location: 1046-3070 bp Feature: domain Description: Peptidase_C14 Location: 1178-2000 bp Feature: domain Description: Peptidase_C14 Location: 1178-2 000 bp Feature: domain Description: YfmG Location: 2141-3056 bp Feature: domain Description: YfmG Location: 2 141-3056 bp Feature: gene Location: 3133-3462 bp Feature: domain Description: Avd_like Location: 3136-3439 bp Feature: domain Description: Avd_like Location: 3136-3439 bp Feature: gene Location: 3459-4087 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3663-3978 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3663-3978 bp Feature: gene Location: 4235-5587 bp Feature: domain Description: KOG1546 Location: 4301-4733 bp Feature: domain Description: KOG1546 Location: 4301-4733 bp Feature: domain Description: DUF4384 Location: 5189-5423 bp Feature: domain Description: DUF4384 Location: 5189-542 3 bp Feature: gene Location: 5604-5822 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_C14 (pfam00656), YfmG (COG1262), Avd_like (cd16376), RVT-DGRs, KOG1546 (KOG1546, Metacaspase involved in regulation of apoptosis ), DUF4384 (pfam14326)