myRT

myRT report for GCA_002748445.1_ASM274844v1

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Seq: PDSK01000128.1 Candidate division KSB3 bacterium isolate DOLJORAL78_47_16 DolJOral78_scaffold_3406, whole genome shotgun sequence (15248 bp)
Overview 1 RT 1: 85-6478 bp Neighborhood of RT #1 [85, 9165] UgpA PBP2_TMBP_like RVT-Retrons SWIM WGR_DNA_ligase HEAT Feature: gene Location: 85-975 bp Feature: domain Description: UgpA Location: 115-970 bp Feature: domain Description: UgpA Location: 1 1 5-970 bp Feature: gene Location: 1077-2288 bp Feature: domain Description: PBP2_TMBP_like Location: 1182-2250 bp Feature: domain Description: PBP2_TMBP_like Location: 1 1 82-2250 bp Feature: gene Location: 2450-3850 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3008-3626 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3008-3626 bp Feature: gene Location: 4185-5825 bp Feature: domain Description: SWIM Location: 5703-5796 bp Feature: domain Description: SWIM Location: 5703-5796 bp Feature: gene Location: 5914-9165 bp Feature: domain Description: WGR_DNA_ligase Location: 5932-6151 bp Feature: domain Description: WGR_DNA_ligase Location: 5932-61 51 bp Feature: domain Description: HEAT Location: 6217-6478 bp Feature: domain Description: HEAT Location: 621 7-6478 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_TMBP_like (cd13585), RVT-Retrons, SWIM (pfam04434), WGR_DNA_ligase (cd07998), HEAT (sd00044)

Seq: PDSK01000010.1 Candidate division KSB3 bacterium isolate DOLJORAL78_47_16 DolJOral78_scaffold_9334, whole genome shotgun sequence (9470 bp)
Overview 1 RT 1: 3857-8460 bp Neighborhood of RT #1 [3857, 8460] SLC6sbd_Tyt1-Like PRK13237 RVT-DGRs TPR OmpA Feature: gene Location: 3857-5182 bp Feature: domain Description: SLC6sbd_Tyt1-Like Location: 3881-5156 bp Feature: domain Description: SLC6sbd_Tyt1-Like Location: 3881-5156 bp Feature: gene Location: 5353-6732 bp Feature: domain Description: PRK13237 Location: 5362-6727 bp Feature: domain Description: PRK132 37 Location: 5362 -672 7 bp Feature: gene Location: 7001-7126 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7004-7124 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7004-712 4 bp Feature: gene Location: 7147-8079 bp Feature: domain Description: TPR Location: 7291-7510 bp Feature: domain Description: TPR Location: 72 91-7510 bp Feature: domain Description: OmpA Location: 7717-8074 bp Feature: domain Description: OmpA Location: 7717-8074 bp Feature: gene Location: 8194-8460 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLC6sbd_Tyt1-Like (cd10336), PRK13237 (tyrosine phenol-lyase; Provisional), RVT-DGRs, TPR (smart00028), OmpA (pfam00691)