myRT

myRT report for GCA_002749695.1_ASM274969v1

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Seq: PEEQ01000001.1 Janthinobacterium sp. 13 Ga0181120_11, whole genome shotgun sequence (6331742 bp)
Overview 1 RT 1: 3367285-3382312 bp 2 RT 2: 3539146-3547689 bp Neighborhood of RT #1 [3367285, 3382314] Tn7_Tnp_TnsA_N HTH_31 dnaG RVT-UG10 RVT-UG10 gyrB PRK05643 Neighborhood of RT #2 [3539146, 3547706] NTP_transferase_like_1 COG3178 RVT_N RVT-GII GIIM HNHc LptD PRK10770 Feature: gene Location: 3367285-3368007 bp Ori: PIF10933.1 Feature: domain Description: Tn7_Tnp_TnsA_N Location: 3367486-3367705 bp Feature: domain Description: Tn7_Tnp_TnsA_N Location: 3367486-3367705 bp Feature: gene Location: 3368249-3368671 bp Ori: PIF10934.1 Feature: domain Description: HTH_31 Location: 3368261-3368438 bp Feature: domain Description: HTH_31 Location: 3368261 -3368438 bp Feature: gene Location: 3369326-3377041 bp Ori: PIF10935.1 Feature: domain Description: dnaG Location: 3369344-3370514 bp Feature: domain Description: dnaG Location: 3369344-337051 4 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 3371240-3371450 bp Feature: RT Description: RVT-UG1 0 Note: UG1 0 RT Location: 3371 240-3371 450 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 3371627-3371807 bp Feature: RT Description: RVT-UG1 0 Note: UG1 0 RT Location: 3371 627-3371 807 bp Feature: gene Location: 3378628-3381126 bp Ori: PIF10936.1 Feature: domain Description: gyrB Location: 3378667-3381124 bp Feature: domain Description: gyrB Location: 3378667-3381 1 24 bp Feature: gene Location: 3381208-3382314 bp Ori: PIF10937.1 Feature: domain Description: PRK05643 Location: 3381220-3382312 bp Feature: domain Description: PRK05643 Location: 3381 220-338231 2 bp Feature: gene Location: 3539146-3539865 bp Ori: PIF11064.1 Feature: domain Description: NTP_transferase_like_1 Location: 3539152-3539830 bp Feature: domain Description: NTP_transferase_like_1 Location: 35391 52-3539830 bp Feature: gene Location: 3539928-3540995 bp Ori: PIF11065.1 Feature: domain Description: COG3178 Location: 3539955-3540969 bp Feature: domain Description: COG31 78 Location: 3539955-3540969 bp Feature: gene Location: 3541120-3542823 bp Ori: PIF11066.1 Feature: domain Description: RVT_N Location: 3541180-3541423 bp Feature: domain Description: RVT_N Location: 3541 1 80-3541 423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3541468-3542116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3541 468-35421 1 6 bp Feature: domain Description: GIIM Note: maturase Location: 3542167-3542401 bp Feature: domain Description: GIIM Note: maturase Location: 35421 67-3542401 bp Feature: domain Description: HNHc Note: nucleases Location: 3542635-3542785 bp Feature: domain Description: HNHc Note: nucleases Location: 3542635-3542785 bp Feature: gene Location: 3543968-3546214 bp Ori: PIF11067.1 Feature: domain Description: LptD Location: 3544022-3546128 bp Feature: domain Description: LptD Location: 3544022-35461 28 bp Feature: gene Location: 3546303-3547706 bp Ori: PIF11068.1 Feature: domain Description: PRK10770 Location: 3546474-3547689 bp Feature: domain Description: PRK1 0770 Location: 3546474-3547689 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tn7_Tnp_TnsA_N (pfam08722), HTH_31 (pfam13560), dnaG (TIGR01391), RVT-UG10, gyrB (TIGR01059), PRK05643 (DNA polymerase III subunit beta; Validated), NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII
GIIM (pfam08388), HNHc (smart00507), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)