myRT

myRT report for GCA_002749905.1_ASM274990v1

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Seq: NBUT01000011.1 Proteus vulgaris strain CICC C1375, whole genome shotgun sequence (79064 bp)
Overview 1 RT 1: 25996-32669 bp Neighborhood of RT #1 [25996, 32686] a_cpa1 DUF2188 RVT_N RVT-GII GIIM HNHc groEL Feature: gene Location: 25996-27627 bp Feature: domain Description: a_cpa1 Location: 26023-27610 bp Feature: domain Description: a_cpa1 Location: 26023-2761 0 bp Feature: gene Location: 27936-28163 bp Feature: domain Description: DUF2188 Location: 27954-28134 bp Feature: domain Description: DUF21 88 Location: 27954-281 34 bp Feature: gene Location: 28270-29946 bp Feature: domain Description: RVT_N Location: 28342-28585 bp Feature: domain Description: RVT_N Location: 28342-28585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28630-29275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28630-29275 bp Feature: domain Description: GIIM Note: maturase Location: 29326-29560 bp Feature: domain Description: GIIM Note: maturase Location: 29326-29560 bp Feature: domain Description: HNHc Note: nucleases Location: 29773-29929 bp Feature: domain Description: HNHc Note: nucleases Location: 29773-29929 bp Feature: gene Location: 30166-30378 bp Feature: gene Location: 31040-32686 bp Feature: domain Description: groEL Location: 31046-32669 bp Feature: domain Description: groEL Location: 31 046-32669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT a_cpa1 (TIGR00831), DUF2188 (pfam09954), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852)

Seq: NBUT01000024.1 Proteus vulgaris strain CICC scaffold19, whole genome shotgun sequence (2626 bp)
Overview 1 RT 1: 835-2400 bp Neighborhood of RT #1 [835, 2624] RVT-Retrons Feature: gene Location: 835-1035 bp Feature: gene Location: 1565-1711 bp Feature: gene Location: 1794-2624 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1866-2400 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1866-2 400 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: NBUT01000015.1 Proteus vulgaris strain CICC scaffold2, whole genome shotgun sequence (641623 bp)
Overview 1 RT 1: 115004-120671 bp Neighborhood of RT #1 [115004, 120730] DEXQc_UvrD DEXQc_UvrD RecB RVT-UG17 SLATT_5 StrB Feature: gene Location: 115004-117046 bp Feature: domain Description: DEXQc_UvrD Location: 115124-115370 bp Feature: domain Description: DEXQc_UvrD Location: 115124-1153 70 bp Feature: domain Description: DEXQc_UvrD Location: 115580-115850 bp Feature: domain Description: DEXQc_UvrD Location: 115580-115850 bp Feature: domain Description: RecB Location: 116867-117005 bp Feature: domain Description: RecB Location: 116867-117005 bp Feature: gene Location: 117160-117288 bp Feature: gene Location: 117482-118813 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 117710-118313 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 117710-1183 13 bp Feature: gene Location: 118818-119465 bp Feature: domain Description: SLATT_5 Location: 118824-119415 bp Feature: domain Description: SLATT_5 Location: 118824-119415 bp Feature: gene Location: 119858-120730 bp Feature: domain Description: StrB Location: 119936-120671 bp Feature: domain Description: StrB Location: 11993 6-120671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXQc_UvrD (cd17932), RecB (COG4998), RVT-UG17, SLATT_5 (pfam18160), StrB (COG3570)

Seq: NBUT01000004.1 Proteus vulgaris strain CICC scaffold3, whole genome shotgun sequence (506514 bp)
Overview 1 RT 1: 286500-291356 bp Neighborhood of RT #1 [286500, 291356] HEPN_RES_NTD1 HEPN_RiboL-PSP RVT-Retrons Feature: gene Location: 286500-287462 bp Feature: domain Description: HEPN_RES_NTD1 Location: 286569-286848 bp Feature: domain Description: HEPN_RES_NTD1 Location: 286569-28684 8 bp Feature: domain Description: HEPN_RiboL-PSP Location: 286872-287400 bp Feature: domain Description: HEPN_RiboL-PSP Location: 286872-2874 00 bp Feature: gene Location: 287676-287804 bp Feature: gene Location: 288063-289895 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 288198-288897 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 288198-288897 bp Feature: gene Location: 290278-290406 bp Feature: gene Location: 290424-291356 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HEPN_RES_NTD1 (pfam18870), HEPN_RiboL-PSP (pfam18735), RVT-Retrons

Seq: NBUT01000010.1 Proteus vulgaris strain CICC scaffold8, whole genome shotgun sequence (324769 bp)
Overview 1 RT 1: 82907-87629 bp Neighborhood of RT #1 [82907, 87808] RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 82907-83239 bp Feature: gene Location: 83239-83928 bp Feature: gene Location: 84550-85512 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 84679-85276 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 84679-85 276 bp Feature: gene Location: 85512-87158 bp Feature: domain Description: COG3950 Location: 85698-86952 bp Feature: domain Description: COG395 0 Location: 85 698-8695 2 bp Feature: gene Location: 87161-87808 bp Feature: domain Description: TIGR02646 Location: 87254-87629 bp Feature: domain Description: TIGR02646 Location: 8725 4-87629 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)