myRT

myRT report for GCA_002750435.1_ASM275043v1

Download annotations/find similar RTs

Seq: PEIO01000123.1 Pseudomonas syringae pv. actinidiae strain IPV-BO-9286 IPVBO9286_contig_124, whole genome shotgun sequence (1922 bp)
Overview 1 RT 1: 1-1736 bp Neighborhood of RT #1 [1, 1843] RVT-GII GIIM Feature: gene Location: 1-168 bp Feature: gene Location: 575-1843 bp Ori: PIH68670.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 779-1436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 779-1 436 bp Feature: domain Description: GIIM Note: maturase Location: 1514-1736 bp Feature: domain Description: GIIM Note: maturase Location: 1 51 4-1 736 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PEIO01000112.1 Pseudomonas syringae pv. actinidiae strain IPV-BO-9286 IPVBO9286_contig_113, whole genome shotgun sequence (37099 bp)
Overview 1 RT 1: 29935-35871 bp Neighborhood of RT #1 [29935, 35906] modC_ABC Top1 RVT-GII Intron_maturas2 HNHc DUF2625 Feature: gene Location: 29935-31023 bp Ori: PIH69054.1 Gene: modC Feature: domain Description: modC_ABC Location: 29950-31015 bp Feature: domain Description: modC_ABC Location: 2 9950-31015 bp Feature: gene Location: 31112-32167 bp Ori: PIH69055.1 Feature: domain Description: Top1 Location: 31145-32159 bp Feature: domain Description: Top1 Location: 31145-32 159 bp Feature: gene Location: 32998-34833 bp Ori: PIH69056.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33259-34072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 332 59-34072 bp Feature: domain Description: Intron_maturas2 Location: 34168-34483 bp Feature: domain Description: Intron_maturas2 Location: 34168-34483 bp Feature: domain Description: HNHc Note: nucleases Location: 34606-34771 bp Feature: domain Description: HNHc Note: nucleases Location: 34606-34771 bp Feature: gene Location: 35073-35264 bp Feature: gene Location: 35271-35906 bp Ori: PIH69058.1 Feature: domain Description: DUF2625 Location: 35283-35871 bp Feature: domain Description: DUF2 62 5 Location: 352 83-35871 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT modC_ABC (TIGR02142), Top1 (COG3569), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF2625 (pfam10946)

Seq: PEIO01000020.1 Pseudomonas syringae pv. actinidiae strain IPV-BO-9286 IPVBO9286_contig_20, whole genome shotgun sequence (1077 bp)
Overview 1 RT 1: 1-919 bp Neighborhood of RT #1 [1, 919] RVT-GII Feature: gene Location: 1-637 bp Ori: PIH71783.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 4-63 7 bp Feature: gene Location: 639-919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PEIO01000169.1 Pseudomonas syringae pv. actinidiae strain IPV-BO-9286 IPVBO9286_contig_170, whole genome shotgun sequence (1743 bp)
Overview 1 RT 1: 505-1615 bp Neighborhood of RT #1 [505, 1743] RVT-GII GIIM Feature: gene Location: 505-1743 bp Ori: PIH67862.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745-1360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74 5-1360 bp Feature: domain Description: GIIM Note: maturase Location: 1405-1615 bp Feature: domain Description: GIIM Note: maturase Location: 14 05-1615 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PEIO01000268.1 Pseudomonas syringae pv. actinidiae strain IPV-BO-9286 IPVBO9286_contig_269, whole genome shotgun sequence (1159 bp)
Overview 1 RT 1: 1-1159 bp Neighborhood of RT #1 [1, 1159] IstB_IS21 RVT-GII Feature: gene Location: 1-270 bp Ori: PIH67188.1 Feature: domain Description: IstB_IS21 Location: 7-268 bp Feature: domain Description: IstB_IS21 Location: 7-268 bp Feature: gene Location: 269-474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 293-461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 293-461 bp Feature: gene Location: 859-1159 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IstB_IS21 (pfam01695), RVT-GII

Seq: PEIO01000029.1 Pseudomonas syringae pv. actinidiae strain IPV-BO-9286 IPVBO9286_contig_29, whole genome shotgun sequence (746 bp)
Overview 1 RT 1: 1-490 bp Neighborhood of RT #1 [1, 624] RVT-GII GIIM Feature: gene Location: 1-624 bp Ori: PIH71575.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-205 bp Feature: domain Description: GIIM Note: maturase Location: 262-490 bp Feature: domain Description: GIIM Note: maturase Location: 26 2-490 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PEIO01000136.1 Pseudomonas syringae pv. actinidiae strain IPV-BO-9286 IPVBO9286_contig_137, whole genome shotgun sequence (48479 bp)
Overview 1 RT 1: 21-6315 bp Neighborhood of RT #1 [21, 6404] COG3666 DDE_Tnp_1_6 RVT-Retrons ComA-like_MBL-fold trans_reg_C Feature: gene Location: 21-1205 bp Feature: domain Description: COG3666 Location: 63-504 bp Feature: domain Description: COG3666 Location: 63-504 bp Feature: domain Description: DDE_Tnp_1_6 Location: 981-1188 bp Feature: domain Description: DDE_Tnp_1_6 Location: 981-1188 bp Feature: gene Location: 1703-3412 bp Ori: PIH68415.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1856-2453 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1856-2453 bp Feature: gene Location: 3856-5274 bp Ori: PIH68416.1 Feature: domain Description: ComA-like_MBL-fold Location: 4405-4891 bp Feature: domain Description: ComA-like_MBL-fold Location: 4405-4891 bp Feature: gene Location: 6081-6404 bp Ori: PIH68417.1 Feature: domain Description: trans_reg_C Location: 6105-6315 bp Feature: domain Description: trans_reg_C Location: 6105-6315 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-Retrons, ComA-like_MBL-fold (cd07731), trans_reg_C (cd00383)

Seq: PEIO01000214.1 Pseudomonas syringae pv. actinidiae strain IPV-BO-9286 IPVBO9286_contig_215, whole genome shotgun sequence (4806 bp)
Overview 1 RT 1: 124-3256 bp Neighborhood of RT #1 [124, 3256] RVT-UG9 UvrD_C Feature: gene Location: 124-1263 bp Ori: PIH67399.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 127-511 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 127-511 bp Feature: gene Location: 1361-1951 bp Ori: PIH67400.1 Feature: domain Description: UvrD_C Location: 1685-1880 bp Feature: domain Description: UvrD_C Location: 168 5-18 8 0 bp Feature: gene Location: 2312-3256 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, UvrD_C (pfam13361)