myRT

myRT report for GCA_002750445.1_ASM275044v1

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Seq: PEIN01000109.1 Pseudomonas syringae pv. actinidiae strain IPV-BO-8893 IPVBO8893_contig_109, whole genome shotgun sequence (36974 bp)
Overview 1 RT 1: 1120-7083 bp Neighborhood of RT #1 [1120, 7091] DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 1120-1755 bp Ori: PIH63508.1 Feature: domain Description: DUF2625 Location: 1132-1720 bp Feature: domain Description: DUF2625 Location: 1 1 32-1 720 bp Feature: gene Location: 1762-1953 bp Feature: gene Location: 2193-4028 bp Ori: PIH63510.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2454-3267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2454-3267 bp Feature: domain Description: Intron_maturas2 Location: 3363-3678 bp Feature: domain Description: Intron_maturas2 Location: 3363-3678 bp Feature: domain Description: HNHc Note: nucleases Location: 3801-3966 bp Feature: domain Description: HNHc Note: nucleases Location: 3801 -3966 bp Feature: gene Location: 4859-5914 bp Ori: PIH63511.1 Feature: domain Description: Top1 Location: 4892-5906 bp Feature: domain Description: Top1 Location: 4892-5906 bp Feature: gene Location: 6003-7091 bp Ori: PIH63512.1 Gene: modC Feature: domain Description: modC_ABC Location: 6018-7083 bp Feature: domain Description: modC_ABC Location: 601 8-7083 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)

Seq: PEIN01000111.1 Pseudomonas syringae pv. actinidiae strain IPV-BO-8893 IPVBO8893_contig_111, whole genome shotgun sequence (1949 bp)
Overview 1 RT 1: 134-1949 bp Neighborhood of RT #1 [134, 1949] RVT-GII GIIM Feature: gene Location: 134-1501 bp Ori: PIH63488.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 467-1082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 467-1082 bp Feature: domain Description: GIIM Note: maturase Location: 1139-1367 bp Feature: domain Description: GIIM Note: maturase Location: 1139-1367 bp Feature: gene Location: 1549-1878 bp Feature: gene Location: 1884-1949 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PEIN01000190.1 Pseudomonas syringae pv. actinidiae strain IPV-BO-8893 IPVBO8893_contig_190, whole genome shotgun sequence (1902 bp)
Overview 1 RT 1: 1-1902 bp Neighborhood of RT #1 [1, 1902] RVT-GII GIIM Feature: gene Location: 1-1258 bp Ori: PIH62234.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241-856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241-856 bp Feature: domain Description: GIIM Note: maturase Location: 901-1111 bp Feature: domain Description: GIIM Note: maturase Location: 901-1111 bp Feature: gene Location: 1706-1902 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PEIN01000214.1 Pseudomonas syringae pv. actinidiae strain IPV-BO-8893 IPVBO8893_contig_214, whole genome shotgun sequence (4842 bp)
Overview 1 RT 1: 160-3292 bp Neighborhood of RT #1 [160, 3292] RVT-UG9 UvrD_C Feature: gene Location: 160-1299 bp Ori: PIH61939.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 163-547 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 163-54 7 bp Feature: gene Location: 1397-1987 bp Ori: PIH61940.1 Feature: domain Description: UvrD_C Location: 1721-1916 bp Feature: domain Description: UvrD_C Location: 1721-1916 bp Feature: gene Location: 2348-3292 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, UvrD_C (pfam13361)

Seq: PEIN01000160.1 Pseudomonas syringae pv. actinidiae strain IPV-BO-8893 IPVBO8893_contig_160, whole genome shotgun sequence (48461 bp)
Overview 1 RT 1: 76-6370 bp Neighborhood of RT #1 [76, 6459] COG3666 DDE_Tnp_1_6 RVT-Retrons ComA-like_MBL-fold trans_reg_C Feature: gene Location: 76-1260 bp Feature: domain Description: COG3666 Location: 118-559 bp Feature: domain Description: COG3666 Location: 118-5 5 9 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1036-1243 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1036-1243 bp Feature: gene Location: 1758-3467 bp Ori: PIH62647.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1911-2508 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1911-25 08 bp Feature: gene Location: 3911-5329 bp Ori: PIH62648.1 Feature: domain Description: ComA-like_MBL-fold Location: 4460-4946 bp Feature: domain Description: ComA-like_MBL-fold Location: 4460-4946 bp Feature: gene Location: 6136-6459 bp Ori: PIH62649.1 Feature: domain Description: trans_reg_C Location: 6160-6370 bp Feature: domain Description: trans_reg_C Location: 6160-6370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-Retrons, ComA-like_MBL-fold (cd07731), trans_reg_C (cd00383)

Seq: PEIN01000147.1 Pseudomonas syringae pv. actinidiae strain IPV-BO-8893 IPVBO8893_contig_147, whole genome shotgun sequence (2072 bp)
Overview 1 RT 1: 1-2069 bp Neighborhood of RT #1 [1, 2072] RVT-GII GIIM TnpB_IS66 Feature: gene Location: 1-200 bp Feature: gene Location: 607-1875 bp Ori: PIH62907.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 811-1468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 811-146 8 bp Feature: domain Description: GIIM Note: maturase Location: 1546-1768 bp Feature: domain Description: GIIM Note: maturase Location: 1546 -176 8 bp Feature: gene Location: 1922-2072 bp Feature: domain Description: TnpB_IS66 Location: 1928-2069 bp Feature: domain Description: TnpB_IS6 6 Location: 1928-206 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), TnpB_IS66 (pfam05717)

Seq: PEIN01000254.1 Pseudomonas syringae pv. actinidiae strain IPV-BO-8893 IPVBO8893_contig_255, whole genome shotgun sequence (1342 bp)
Overview 1 RT 1: 1-1342 bp Neighborhood of RT #1 [1, 1342] IstB_IS21 RVT-GII Feature: gene Location: 1-205 bp Feature: gene Location: 197-538 bp Ori: PIH61707.1 Feature: domain Description: IstB_IS21 Location: 203-470 bp Feature: domain Description: IstB_IS21 Location: 203-47 0 bp Feature: gene Location: 537-742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 561-729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 561-7 29 bp Feature: gene Location: 1127-1342 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IstB_IS21 (pfam01695), RVT-GII