myRT

myRT report for GCA_002750455.1_ASM275045v1

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Seq: PEIP01000173.1 Pseudomonas syringae pv. actinidiae strain IPV-BO-9312 IPVBO9312_contig_173, whole genome shotgun sequence (1733 bp)
Overview 1 RT 1: 505-1615 bp Neighborhood of RT #1 [505, 1733] RVT-GII GIIM Feature: gene Location: 505-1733 bp Ori: PIH73514.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745-1360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745-1 360 bp Feature: domain Description: GIIM Note: maturase Location: 1405-1615 bp Feature: domain Description: GIIM Note: maturase Location: 1 405-1 61 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PEIP01000078.1 Pseudomonas syringae pv. actinidiae strain IPV-BO-9312 IPVBO9312_contig_78, whole genome shotgun sequence (1835 bp)
Overview 1 RT 1: 539-1700 bp Neighborhood of RT #1 [539, 1807] RVT-GII GIIM Feature: gene Location: 539-1807 bp Ori: PIH75631.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 743-1400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 743-1400 bp Feature: domain Description: GIIM Note: maturase Location: 1478-1700 bp Feature: domain Description: GIIM Note: maturase Location: 1478-1700 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PEIP01000304.1 Pseudomonas syringae pv. actinidiae strain IPV-BO-9312 IPVBO9312_contig_305, whole genome shotgun sequence (587 bp)
Overview 1 RT 1: 372-564 bp Neighborhood of RT #1 [372, 577] RVT-GII Feature: gene Location: 372-577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 396-564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 96-564 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PEIP01000035.1 Pseudomonas syringae pv. actinidiae strain IPV-BO-9312 IPVBO9312_contig_35, whole genome shotgun sequence (36974 bp)
Overview 1 RT 1: 1120-7083 bp Neighborhood of RT #1 [1120, 7091] DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 1120-1755 bp Ori: PIH76814.1 Feature: domain Description: DUF2625 Location: 1132-1720 bp Feature: domain Description: DUF2625 Location: 1132-1720 bp Feature: gene Location: 1762-1953 bp Feature: gene Location: 2193-4028 bp Ori: PIH76816.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2454-3267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 54 -3267 bp Feature: domain Description: Intron_maturas2 Location: 3363-3678 bp Feature: domain Description: Intron_maturas2 Location: 3363-3678 bp Feature: domain Description: HNHc Note: nucleases Location: 3801-3966 bp Feature: domain Description: HNHc Note: nucleases Location: 3801-3966 bp Feature: gene Location: 4859-5914 bp Ori: PIH76817.1 Feature: domain Description: Top1 Location: 4892-5906 bp Feature: domain Description: Top1 Location: 4 892-5906 bp Feature: gene Location: 6003-7091 bp Ori: PIH76818.1 Gene: modC Feature: domain Description: modC_ABC Location: 6018-7083 bp Feature: domain Description: modC_ABC Location: 6018-7083 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)

Seq: PEIP01000160.1 Pseudomonas syringae pv. actinidiae strain IPV-BO-9312 IPVBO9312_contig_160, whole genome shotgun sequence (770 bp)
Overview 1 RT 1: 15-636 bp Neighborhood of RT #1 [15, 770] RVT-GII GIIM Feature: gene Location: 15-83 bp Feature: gene Location: 177-770 bp Ori: PIH73647.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 189-351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 189-35 1 bp Feature: domain Description: GIIM Note: maturase Location: 408-636 bp Feature: domain Description: GIIM Note: maturase Location: 408-636 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PEIP01000206.1 Pseudomonas syringae pv. actinidiae strain IPV-BO-9312 IPVBO9312_contig_207, whole genome shotgun sequence (4935 bp)
Overview 1 RT 1: 1-3385 bp Neighborhood of RT #1 [1, 3385] RVT-UG9 UvrD_C Feature: gene Location: 1-162 bp Feature: gene Location: 253-1392 bp Ori: PIH73162.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 256-640 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 256 -6 40 bp Feature: gene Location: 1490-2080 bp Ori: PIH73163.1 Feature: domain Description: UvrD_C Location: 1814-2009 bp Feature: domain Description: UvrD_C Location: 1814-2009 bp Feature: gene Location: 2441-3385 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, UvrD_C (pfam13361)

Seq: PEIP01000038.1 Pseudomonas syringae pv. actinidiae strain IPV-BO-9312 IPVBO9312_contig_38, whole genome shotgun sequence (1003 bp)
Overview 1 RT 1: 4-999 bp Neighborhood of RT #1 [4, 1003] RVT-GII Feature: gene Location: 4-333 bp Feature: gene Location: 381-1003 bp Ori: PIH76664.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 714-999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 14-999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PEIP01000058.1 Pseudomonas syringae pv. actinidiae strain IPV-BO-9312 IPVBO9312_contig_58, whole genome shotgun sequence (48609 bp)
Overview 1 RT 1: 42057-48423 bp Neighborhood of RT #1 [42057, 48440] trans_reg_C ComA-like_MBL-fold RVT-Retrons COG3666 DDE_Tnp_1_6 Feature: gene Location: 42057-42380 bp Ori: PIH76209.1 Feature: domain Description: trans_reg_C Location: 42081-42291 bp Feature: domain Description: trans_reg_C Location: 4208 1-42291 bp Feature: gene Location: 43187-44605 bp Ori: PIH76210.1 Feature: domain Description: ComA-like_MBL-fold Location: 43736-44222 bp Feature: domain Description: ComA-like_MBL-fold Location: 43736-44222 bp Feature: gene Location: 45049-46758 bp Ori: PIH76211.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45202-45799 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45202-45799 bp Feature: gene Location: 47256-48440 bp Feature: domain Description: COG3666 Location: 47298-47739 bp Feature: domain Description: COG3666 Location: 47298 -47739 bp Feature: domain Description: DDE_Tnp_1_6 Location: 48216-48423 bp Feature: domain Description: DDE_Tnp_1_6 Location: 48 216-48 423 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), ComA-like_MBL-fold (cd07731), RVT-Retrons, COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)