myRT

myRT report for GCA_002750905.2_ASM275090v2

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Seq: PEJV02000152.1 Enterococcus faecium strain ET12_17 NODE_152_length_1903_cov_392.782_ID_303, whole genome shotgun sequence (1903 bp)
Overview 1 RT 1: 77-1286 bp Neighborhood of RT #1 [77, 1465] RVT-GII GIIM Feature: gene Location: 77-1465 bp Ori: PJN96938.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 398-1013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 398-1 01 3 bp Feature: domain Description: GIIM Note: maturase Location: 1070-1286 bp Feature: domain Description: GIIM Note: maturase Location: 1 070-1 286 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PEJV02000142.1 Enterococcus faecium strain ET12_17 NODE_142_length_2682_cov_215.139_ID_283, whole genome shotgun sequence (2682 bp)
Overview 1 RT 1: 745-2682 bp Neighborhood of RT #1 [745, 2682] RVT-GII Feature: gene Location: 745-2571 bp Ori: PJN96959.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1045-1744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1045-1744 bp Feature: gene Location: 2594-2682 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PEJV02000140.1 Enterococcus faecium strain ET12_17 NODE_140_length_2761_cov_159.132_ID_279, whole genome shotgun sequence (2761 bp)
Overview 1 RT 1: 721-2512 bp Neighborhood of RT #1 [721, 2631] RVT-GII HNHc Feature: gene Location: 721-2631 bp Ori: PJN96963.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054-1792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054-1792 bp Feature: domain Description: HNHc Note: nucleases Location: 2347-2512 bp Feature: domain Description: HNHc Note: nucleases Location: 23 47-2512 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: PEJV02000019.1 Enterococcus faecium strain ET12_17 NODE_19_length_42033_cov_47.7624_ID_37, whole genome shotgun sequence (42033 bp)
Overview 1 RT 1: 17278-27219 bp Neighborhood of RT #1 [17278, 27219] TraG_VirD4 TraG_VirD4 RVT-GII HNH_4 TraG-D_C Feature: gene Location: 17278-19332 bp Feature: gene Location: 19332-21164 bp Ori: PJN98765.1 Feature: domain Description: TraG_VirD4 Location: 19911-20589 bp Feature: domain Description: TraG_VirD4 Location: 19911-20589 bp Feature: domain Description: TraG_VirD4 Location: 20976-21141 bp Feature: domain Description: TraG_VirD4 Location: 20976-2114 1 bp Feature: gene Location: 21859-23775 bp Ori: PJN98766.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22198-22933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22198-22933 bp Feature: domain Description: HNH_4 Location: 23527-23632 bp Feature: domain Description: HNH_4 Location: 23527-23632 bp Feature: gene Location: 23892-24692 bp Feature: domain Description: TraG-D_C Location: 23895-24210 bp Feature: domain Description: TraG-D_C Location: 23895-24 210 bp Feature: gene Location: 24689-27219 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG_VirD4, RVT-GII, HNH_4 (pfam13395), TraG-D_C (pfam12696)

Seq: PEJV02000130.1 Enterococcus faecium strain ET12_17 NODE_130_length_3467_cov_72.0145_ID_259, whole genome shotgun sequence (3467 bp)
Overview 1 RT 1: 63-3467 bp Neighborhood of RT #1 [63, 3467] RVT-AbiP2 HsdM Feature: gene Location: 63-1538 bp Ori: PJN96988.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 411-876 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 411-876 bp Feature: gene Location: 1874-3319 bp Feature: domain Description: HsdM Location: 1895-3320 bp Feature: domain Description: HsdM Location: 1895 -3320 bp Feature: gene Location: 3375-3467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, HsdM (COG0286)