myRT

myRT report for GCA_002752015.1_ASM275201v1

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Seq: MNKX01000021.1 Erwinia sp. OLMTSP26 NODE_23_length_55788_cov_37.1722_ID_45, whole genome shotgun sequence (55788 bp)
Overview 1 RT 1: 343-9137 bp Neighborhood of RT #1 [343, 9148] LysM IAT_beta Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 RVT-UG4 PRK10995 Feature: gene Location: 343-3018 bp Ori: PIJ83644.1 Feature: domain Description: LysM Location: 526-664 bp Feature: domain Description: LysM Location: 526-664 bp Feature: domain Description: IAT_beta Location: 763-1582 bp Feature: domain Description: IAT_beta Location: 763-1 582 bp Feature: domain Description: Invasin_D3 Location: 1918-2224 bp Feature: domain Description: Invasin_D3 Location: 1 91 8-2224 bp Feature: domain Description: Invasin_D3 Location: 2266-2578 bp Feature: domain Description: Invasin_D3 Location: 2266-2578 bp Feature: domain Description: Invasin_D3 Location: 2599-2950 bp Feature: domain Description: Invasin_D3 Location: 2599-2950 bp Feature: gene Location: 3015-7265 bp Ori: PIJ83645.1 Feature: domain Description: Invasin_D3 Location: 3021-3282 bp Feature: domain Description: Invasin_D3 Location: 3021 -3282 bp Feature: domain Description: Invasin_D3 Location: 3309-3579 bp Feature: domain Description: Invasin_D3 Location: 3309-3579 bp Feature: domain Description: Invasin_D3 Location: 3657-3990 bp Feature: domain Description: Invasin_D3 Location: 3657-3990 bp Feature: domain Description: Invasin_D3 Location: 4008-4338 bp Feature: domain Description: Invasin_D3 Location: 4008-4338 bp Feature: domain Description: Invasin_D3 Location: 4365-4668 bp Feature: domain Description: Invasin_D3 Location: 4365-4668 bp Feature: domain Description: Invasin_D3 Location: 4704-4986 bp Feature: domain Description: Invasin_D3 Location: 4704-4986 bp Feature: domain Description: Invasin_D3 Location: 5013-5286 bp Feature: domain Description: Invasin_D3 Location: 501 3-5286 bp Feature: domain Description: Invasin_D3 Location: 5388-5634 bp Feature: domain Description: Invasin_D3 Location: 5388-5634 bp Feature: domain Description: Invasin_D3 Location: 5682-5928 bp Feature: domain Description: Invasin_D3 Location: 5682-5928 bp Feature: domain Description: Invasin_D3 Location: 6024-6285 bp Feature: domain Description: Invasin_D3 Location: 6024-6285 bp Feature: domain Description: Invasin_D3 Location: 6336-6609 bp Feature: domain Description: Invasin_D3 Location: 6336-6609 bp Feature: domain Description: Invasin_D3 Location: 6639-6861 bp Feature: domain Description: Invasin_D3 Location: 6639-6861 bp Feature: gene Location: 7509-7805 bp Ori: PIJ83646.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 7512-7665 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 751 2-7665 bp Feature: gene Location: 7800-8117 bp Feature: gene Location: 8480-9148 bp Ori: PIJ83648.1 Feature: domain Description: PRK10995 Location: 8483-9137 bp Feature: domain Description: PRK1 0995 Location: 8483-91 37 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysM (smart00257), IAT_beta (pfam11924), Invasin_D3 (pfam09134), RVT-UG4, PRK10995 (MarC family NAAT transporter)

Seq: MNKX01000017.1 Erwinia sp. OLMTSP26 NODE_5_length_161490_cov_35.2977_ID_9, whole genome shotgun sequence (161490 bp)
Overview 1 RT 1: 5948-12621 bp Neighborhood of RT #1 [5948, 12734] WecH FimA RVT-UG4 FimD FimC Feature: gene Location: 5948-6940 bp Ori: PIJ84524.1 Feature: domain Description: WecH Location: 5951-6938 bp Feature: domain Description: WecH Location: 5951-6938 bp Feature: gene Location: 7388-8896 bp Ori: PIJ84525.1 Feature: domain Description: FimA Location: 8561-8876 bp Feature: domain Description: FimA Location: 8561-8876 bp Feature: gene Location: 8893-9258 bp Ori: PIJ84526.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 8896-9172 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 8896-9172 bp Feature: gene Location: 9301-11883 bp Ori: PIJ84527.1 Feature: domain Description: FimD Location: 9331-11881 bp Feature: domain Description: FimD Location: 9331-11881 bp Feature: gene Location: 11883-12734 bp Ori: PIJ84528.1 Feature: domain Description: FimC Location: 11910-12621 bp Feature: domain Description: FimC Location: 11910-12 62 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WecH (COG3274), FimA (pfam16970), RVT-UG4, FimD (COG3188), FimC (COG3121)