myRT

myRT report for GCA_002752055.1_ASM275205v1

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Seq: MNCH01000005.1 Erwinia sp. OLSSP12 NODE_12_length_96738_cov_32.6061_ID_23, whole genome shotgun sequence (96738 bp)
Overview 1 RT 1: 6009-12682 bp Neighborhood of RT #1 [6009, 12795] WecH FimA RVT-UG4 FimD FimC Feature: gene Location: 6009-7001 bp Ori: PIJ75371.1 Feature: domain Description: WecH Location: 6012-6999 bp Feature: domain Description: WecH Location: 601 2-6999 bp Feature: gene Location: 7449-8957 bp Ori: PIJ75372.1 Feature: domain Description: FimA Location: 8622-8937 bp Feature: domain Description: FimA Location: 8622-8937 bp Feature: gene Location: 8954-9319 bp Ori: PIJ75373.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 8957-9233 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 8957-9233 bp Feature: gene Location: 9362-11944 bp Ori: PIJ75374.1 Feature: domain Description: FimD Location: 9392-11942 bp Feature: domain Description: FimD Location: 9392-1 1 942 bp Feature: gene Location: 11944-12795 bp Ori: PIJ75375.1 Feature: domain Description: FimC Location: 11971-12682 bp Feature: domain Description: FimC Location: 1 1 971 -1 2682 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WecH (COG3274), FimA (pfam16970), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: MNCH01000003.1 Erwinia sp. OLSSP12 NODE_15_length_82948_cov_34.7956_ID_29, whole genome shotgun sequence (82948 bp)
Overview 1 RT 1: 361-9155 bp Neighborhood of RT #1 [361, 9166] LysM IAT_beta Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 RVT-UG4 PRK10995 Feature: gene Location: 361-3036 bp Ori: PIJ75683.1 Feature: domain Description: LysM Location: 544-682 bp Feature: domain Description: LysM Location: 544-682 bp Feature: domain Description: IAT_beta Location: 781-1600 bp Feature: domain Description: IAT_beta Location: 781-1600 bp Feature: domain Description: Invasin_D3 Location: 1936-2242 bp Feature: domain Description: Invasin_D3 Location: 1936-2 2 42 bp Feature: domain Description: Invasin_D3 Location: 2284-2596 bp Feature: domain Description: Invasin_D3 Location: 2 2 84-2 596 bp Feature: domain Description: Invasin_D3 Location: 2617-2968 bp Feature: domain Description: Invasin_D3 Location: 2 617-2 968 bp Feature: gene Location: 3033-7283 bp Ori: PIJ75684.1 Feature: domain Description: Invasin_D3 Location: 3039-3300 bp Feature: domain Description: Invasin_D3 Location: 3039-3300 bp Feature: domain Description: Invasin_D3 Location: 3327-3597 bp Feature: domain Description: Invasin_D3 Location: 332 7-3597 bp Feature: domain Description: Invasin_D3 Location: 3675-4008 bp Feature: domain Description: Invasin_D3 Location: 3675-4008 bp Feature: domain Description: Invasin_D3 Location: 4026-4356 bp Feature: domain Description: Invasin_D3 Location: 402 6-4356 bp Feature: domain Description: Invasin_D3 Location: 4383-4686 bp Feature: domain Description: Invasin_D3 Location: 4383-4686 bp Feature: domain Description: Invasin_D3 Location: 4722-5004 bp Feature: domain Description: Invasin_D3 Location: 472 2 -5004 bp Feature: domain Description: Invasin_D3 Location: 5031-5304 bp Feature: domain Description: Invasin_D3 Location: 5031-5304 bp Feature: domain Description: Invasin_D3 Location: 5406-5652 bp Feature: domain Description: Invasin_D3 Location: 5406-5652 bp Feature: domain Description: Invasin_D3 Location: 5700-5946 bp Feature: domain Description: Invasin_D3 Location: 5700-5946 bp Feature: domain Description: Invasin_D3 Location: 6042-6303 bp Feature: domain Description: Invasin_D3 Location: 6042 -6303 bp Feature: domain Description: Invasin_D3 Location: 6354-6627 bp Feature: domain Description: Invasin_D3 Location: 6354-662 7 bp Feature: domain Description: Invasin_D3 Location: 6657-6879 bp Feature: domain Description: Invasin_D3 Location: 6657-6879 bp Feature: gene Location: 7527-7823 bp Ori: PIJ75685.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 7530-7683 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 7530-7683 bp Feature: gene Location: 7818-8135 bp Feature: gene Location: 8498-9166 bp Ori: PIJ75687.1 Feature: domain Description: PRK10995 Location: 8501-9155 bp Feature: domain Description: PRK10995 Location: 8501-9155 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysM (smart00257), IAT_beta (pfam11924), Invasin_D3 (pfam09134), RVT-UG4, PRK10995 (MarC family NAAT transporter)