myRT

myRT report for GCA_002760105.1_ASM276010v1

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Seq: ASBS01000016.1 Streptococcus suis YS110 contig_16, whole genome shotgun sequence (65438 bp)
Overview 1 RT 1: 20817-29093 bp Neighborhood of RT #1 [20817, 29104] PrgI VirB4_CagE VirB4_CagE AAA_10 RVT_N RVT-GII GIIM TraC-F-type PRK08581 Feature: gene Location: 20817-21185 bp Feature: domain Description: PrgI Location: 20832-21090 bp Feature: domain Description: PrgI Location: 20832-21 090 bp Feature: gene Location: 21292-22683 bp Feature: domain Description: VirB4_CagE Location: 21301-21475 bp Feature: domain Description: VirB4_CagE Location: 21 301 -21 475 bp Feature: domain Description: VirB4_CagE Location: 21844-22444 bp Feature: domain Description: VirB4_CagE Location: 21 844-22444 bp Feature: domain Description: AAA_10 Location: 22522-22669 bp Feature: domain Description: AAA_1 0 Location: 22522-22669 bp Feature: gene Location: 23181-24887 bp Feature: RT Description: RVT_N Location: 23286-23526 bp Feature: RT Description: RVT_N Location: 23286-23526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23574-24234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23574-24234 bp Feature: domain Description: GIIM Note: maturase Location: 24303-24522 bp Feature: domain Description: GIIM Note: maturase Location: 24303-24522 bp Feature: gene Location: 24820-25884 bp Feature: domain Description: TraC-F-type Location: 24976-25759 bp Feature: domain Description: TraC-F-type Location: 24976-25759 bp Feature: gene Location: 25892-29104 bp Feature: domain Description: PRK08581 Location: 28757-29093 bp Feature: domain Description: PRK08581 Location: 28757-29093 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrgI (pfam12666), VirB4_CagE (TIGR00929), AAA_10 (pfam12846), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraC-F-type (TIGR02746), PRK08581 (amidase domain-containing protein)

Seq: ASBS01000023.1 Streptococcus suis YS110 contig_23, whole genome shotgun sequence (4458 bp)
Overview 1 RT 1: 1639-4458 bp Neighborhood of RT #1 [1639, 4458] RVT-GII Feature: gene Location: 1639-2019 bp Feature: gene Location: 2077-2241 bp Feature: gene Location: 2388-4298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2697-3453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 697-3453 bp Feature: gene Location: 4309-4458 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ASBS01000009.1 Streptococcus suis YS110 contig_9, whole genome shotgun sequence (20202 bp)
Overview 1 RT 1: 15066-20200 bp Neighborhood of RT #1 [15066, 20200] SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 RVT_N RVT-GII GIIM Feature: gene Location: 15066-16736 bp Feature: domain Description: SR_TndX_transposase Location: 15069-15309 bp Feature: domain Description: SR_TndX_transposase Location: 15069-153 09 bp Feature: domain Description: Recombinase Location: 15414-15789 bp Feature: domain Description: Recombinase Location: 15414-15789 bp Feature: domain Description: Zn_ribbon_recom Location: 15828-16020 bp Feature: domain Description: Zn_ribbon_recom Location: 15828-16020 bp Feature: domain Description: DUF4368 Location: 16296-16494 bp Feature: domain Description: DUF43 68 Location: 16296-16494 bp Feature: gene Location: 16987-17280 bp Feature: gene Location: 17394-19052 bp Feature: RT Description: RVT_N Location: 17439-17682 bp Feature: RT Description: RVT_N Location: 1743 9-17682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17727-18375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17727-183 75 bp Feature: domain Description: GIIM Note: maturase Location: 18432-18660 bp Feature: domain Description: GIIM Note: maturase Location: 1843 2-18660 bp Feature: gene Location: 19186-19995 bp Feature: gene Location: 20066-20200 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)