myRT

myRT report for GCA_002760125.1_ASM276012v1

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Seq: ASBT01000101.1 Streptococcus suis YS111 contig_102, whole genome shotgun sequence (7154 bp)
Overview 1 RT 1: 4335-7154 bp Neighborhood of RT #1 [4335, 7154] RVT-GII Feature: gene Location: 4335-4715 bp Feature: gene Location: 4773-4937 bp Feature: gene Location: 5084-6994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5393-6149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5393-61 49 bp Feature: gene Location: 7005-7154 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ASBT01000059.1 Streptococcus suis YS111 contig_60, whole genome shotgun sequence (30154 bp)
Overview 1 RT 1: 9790-14898 bp Neighborhood of RT #1 [9790, 15140] RVT_N RVT-GII GIIM SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 Feature: gene Location: 9790-10089 bp Feature: gene Location: 10160-10969 bp Feature: gene Location: 11103-12881 bp Feature: RT Description: RVT_N Location: 11268-11511 bp Feature: RT Description: RVT_N Location: 112 68-11511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11556-12204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11556-12 2 04 bp Feature: domain Description: GIIM Note: maturase Location: 12261-12489 bp Feature: domain Description: GIIM Note: maturase Location: 12 2 61-12 489 bp Feature: gene Location: 12875-13168 bp Feature: gene Location: 13419-15140 bp Feature: domain Description: SR_TndX_transposase Location: 13422-13713 bp Feature: domain Description: SR_TndX_transposase Location: 1342 2 -13713 bp Feature: domain Description: Recombinase Location: 13818-14193 bp Feature: domain Description: Recombinase Location: 13818-14193 bp Feature: domain Description: Zn_ribbon_recom Location: 14232-14424 bp Feature: domain Description: Zn_ribbon_recom Location: 142 32 -1442 4 bp Feature: domain Description: DUF4368 Location: 14700-14898 bp Feature: domain Description: DUF4368 Location: 14700-14898 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287)

Seq: ASBT01000073.1 Streptococcus suis YS111 contig_74, whole genome shotgun sequence (65438 bp)
Overview 1 RT 1: 20817-29093 bp Neighborhood of RT #1 [20817, 29104] PrgI VirB4_CagE VirB4_CagE AAA_10 RVT_N RVT-GII GIIM TraC-F-type PRK08581 Feature: gene Location: 20817-21185 bp Feature: domain Description: PrgI Location: 20832-21090 bp Feature: domain Description: PrgI Location: 2083 2-21090 bp Feature: gene Location: 21292-22683 bp Feature: domain Description: VirB4_CagE Location: 21301-21475 bp Feature: domain Description: VirB4_CagE Location: 213 01-21475 bp Feature: domain Description: VirB4_CagE Location: 21844-22444 bp Feature: domain Description: VirB4_CagE Location: 21844-22444 bp Feature: domain Description: AAA_10 Location: 22522-22669 bp Feature: domain Description: AAA_10 Location: 22522-22669 bp Feature: gene Location: 23181-24887 bp Feature: RT Description: RVT_N Location: 23286-23526 bp Feature: RT Description: RVT_N Location: 23 286-23 526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23574-24234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 574-2423 4 bp Feature: domain Description: GIIM Note: maturase Location: 24303-24522 bp Feature: domain Description: GIIM Note: maturase Location: 243 03 -24522 bp Feature: gene Location: 24820-25884 bp Feature: domain Description: TraC-F-type Location: 24976-25759 bp Feature: domain Description: TraC-F-type Location: 24976-25759 bp Feature: gene Location: 25892-29104 bp Feature: domain Description: PRK08581 Location: 28757-29093 bp Feature: domain Description: PRK08581 Location: 28757-29093 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrgI (pfam12666), VirB4_CagE (TIGR00929), AAA_10 (pfam12846), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraC-F-type (TIGR02746), PRK08581 (amidase domain-containing protein)