myRT

myRT report for GCA_002760195.1_ASM276019v1

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Seq: ASBW01000102.1 Streptococcus suis YS131 contig_102, whole genome shotgun sequence (19692 bp)
Overview 1 RT 1: 1-4436 bp Neighborhood of RT #1 [1, 4678] RVT_N RVT-GII GIIM SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 Feature: gene Location: 1-507 bp Feature: gene Location: 641-2299 bp Feature: RT Description: RVT_N Location: 686-929 bp Feature: RT Description: RVT_N Location: 686-929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 974-1622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 974-1 622 bp Feature: domain Description: GIIM Note: maturase Location: 1679-1907 bp Feature: domain Description: GIIM Note: maturase Location: 1 679-1 907 bp Feature: gene Location: 2413-2706 bp Feature: gene Location: 2957-4678 bp Feature: domain Description: SR_TndX_transposase Location: 2960-3251 bp Feature: domain Description: SR_TndX_transposase Location: 2960-3251 bp Feature: domain Description: Recombinase Location: 3356-3731 bp Feature: domain Description: Recombinase Location: 3356-3731 bp Feature: domain Description: Zn_ribbon_recom Location: 3770-3962 bp Feature: domain Description: Zn_ribbon_recom Location: 3770-3962 bp Feature: domain Description: DUF4368 Location: 4238-4436 bp Feature: domain Description: DUF4368 Location: 4238-4436 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: ASBW01000136.1 Streptococcus suis YS131 contig_137, whole genome shotgun sequence (5239 bp)
Overview 1 RT 1: 2420-5239 bp Neighborhood of RT #1 [2420, 5239] RVT-GII Feature: gene Location: 2420-2800 bp Feature: gene Location: 2858-3022 bp Feature: gene Location: 3169-5079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3478-4234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3478-42 34 bp Feature: gene Location: 5090-5239 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: ASBW01000020.1 Streptococcus suis YS131 contig_20, whole genome shotgun sequence (65512 bp)
Overview 1 RT 1: 36335-44527 bp Neighborhood of RT #1 [36335, 44622] PRK08581 TraC-F-type RVT_N RVT-GII GIIM VirB4_CagE VirB4_CagE AAA_10 PrgI Feature: gene Location: 36335-39547 bp Feature: domain Description: PRK08581 Location: 39200-39536 bp Feature: domain Description: PRK08581 Location: 3 9200-3 953 6 bp Feature: gene Location: 39555-40619 bp Feature: domain Description: TraC-F-type Location: 39711-40494 bp Feature: domain Description: TraC-F-type Location: 3 9711-40494 bp Feature: gene Location: 40552-42258 bp Feature: RT Description: RVT_N Location: 40657-40897 bp Feature: RT Description: RVT_N Location: 40657-40897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40945-41605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40945-41605 bp Feature: domain Description: GIIM Note: maturase Location: 41674-41893 bp Feature: domain Description: GIIM Note: maturase Location: 41674-41893 bp Feature: gene Location: 42756-44147 bp Feature: domain Description: VirB4_CagE Location: 42765-42939 bp Feature: domain Description: VirB4_CagE Location: 42765-4293 9 bp Feature: domain Description: VirB4_CagE Location: 43308-43908 bp Feature: domain Description: VirB4_CagE Location: 43 3 08-43 908 bp Feature: domain Description: AAA_10 Location: 43986-44133 bp Feature: domain Description: AAA_10 Location: 43 986-4413 3 bp Feature: gene Location: 44254-44622 bp Feature: domain Description: PrgI Location: 44269-44527 bp Feature: domain Description: PrgI Location: 44269-44527 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08581 (amidase domain-containing protein), TraC-F-type (TIGR02746), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), VirB4_CagE (TIGR00929), AAA_10 (pfam12846), PrgI (pfam12666)