myRT

myRT report for GCA_002760435.1_ASM276043v1

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Seq: AUUU01000013.1 Clostridium sp. LS contig_14, whole genome shotgun sequence (145505 bp)
Overview 1 RT 1: 84617-90081 bp Neighborhood of RT #1 [84617, 90086] PgsA RVT_N RVT-GII GIIM McrA Abhydrolase_1 YbxI Feature: gene Location: 84617-85147 bp Feature: domain Description: PgsA Location: 84623-85091 bp Feature: domain Description: PgsA Location: 84623-85091 bp Feature: gene Location: 85198-85554 bp Feature: gene Location: 86290-88122 bp Feature: domain Description: RVT_N Location: 86362-86602 bp Feature: domain Description: RVT_N Location: 86362-86602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86662-87313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86662-8731 3 bp Feature: domain Description: GIIM Note: maturase Location: 87376-87610 bp Feature: domain Description: GIIM Note: maturase Location: 87376-8761 0 bp Feature: domain Description: McrA Location: 87772-88003 bp Feature: domain Description: McrA Location: 87772-88003 bp Feature: gene Location: 88337-89023 bp Feature: domain Description: Abhydrolase_1 Location: 88448-88691 bp Feature: domain Description: Abhydrolase_1 Location: 88448-88691 bp Feature: gene Location: 89220-90086 bp Feature: domain Description: YbxI Location: 89373-90081 bp Feature: domain Description: YbxI Location: 89373-90081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PgsA (COG0558), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), Abhydrolase_1 (pfam00561), YbxI (COG2602)

Seq: AUUU01000148.1 Clostridium sp. LS contig_165, whole genome shotgun sequence (7787 bp)
Overview 1 RT 1: 188-3006 bp Neighborhood of RT #1 [188, 3407] RVT-UG2 Arm-DNA-bind_4 Phage_int_SAM_3 INT_ICEBs1_C_like HTH_XRE Feature: gene Location: 188-1501 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 380-1202 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 380-12 02 bp Feature: gene Location: 1571-2749 bp Feature: domain Description: Arm-DNA-bind_4 Location: 1637-1760 bp Feature: domain Description: Arm-DNA-bind_4 Location: 1637-1760 bp Feature: domain Description: Phage_int_SAM_3 Location: 1778-1955 bp Feature: domain Description: Phage_int_SAM_3 Location: 1778-1955 bp Feature: domain Description: INT_ICEBs1_C_like Location: 2123-2690 bp Feature: domain Description: INT_ICEBs1_C_like Location: 2 12 3-2 690 bp Feature: gene Location: 2826-3407 bp Feature: domain Description: HTH_XRE Location: 2838-3006 bp Feature: domain Description: HTH_XRE Location: 2 838-3006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, Arm-DNA-bind_4 (pfam14657), Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189), HTH_XRE (smart00530)

Seq: AUUU01000087.1 Clostridium sp. LS contig_95, whole genome shotgun sequence (6027 bp)
Overview 1 RT 1: 31-5316 bp Neighborhood of RT #1 [31, 5330] Tar CheW RVT-GII GIIM COG2703 PBP1_GGBP Feature: gene Location: 31-1431 bp Feature: domain Description: Tar Location: 385-1399 bp Feature: domain Description: Tar Location: 3 85-13 99 bp Feature: gene Location: 1596-1850 bp Feature: domain Description: CheW Location: 1611-1842 bp Feature: domain Description: CheW Location: 1611-1842 bp Feature: gene Location: 2084-3499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2441-3059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2441-3 059 bp Feature: domain Description: GIIM Note: maturase Location: 3110-3338 bp Feature: domain Description: GIIM Note: maturase Location: 3 110-3 3 3 8 bp Feature: gene Location: 3975-4367 bp Feature: domain Description: COG2703 Location: 3978-4362 bp Feature: domain Description: COG2703 Location: 3 978-43 62 bp Feature: gene Location: 4611-5330 bp Feature: domain Description: PBP1_GGBP Location: 4725-5316 bp Feature: domain Description: PBP1_GGBP Location: 4725-53 16 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tar (COG0840), CheW (smart00260), RVT-GII, GIIM (pfam08388), COG2703 (Hemerythrin ), PBP1_GGBP (cd01539)