myRT

myRT report for GCA_002760655.1_ASM276065v1

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Seq: PDOC01000002.1 Massilia eurypsychrophila strain JCM 30074 ZB100001, whole genome shotgun sequence (591563 bp)
Overview 1 RT 1: 20559-28258 bp 2 RT 2: 469378-475323 bp Neighborhood of RT #1 [20559, 28299] HTH_1 PBP2_MetR YbaK_EbsC RVT_N RVT-GII GIIM HNHc COG2374 COG2374 sensory_box PAS_9 PRK10060 Neighborhood of RT #2 [469378, 475331] DapB BamE RVT_N RVT-GII GIIM HNH fur hrcA Feature: gene Location: 20559-21485 bp Ori: PIL46053.1 Feature: domain Description: HTH_1 Location: 20583-20760 bp Feature: domain Description: HTH_1 Location: 20583-20760 bp Feature: domain Description: PBP2_MetR Location: 20850-21438 bp Feature: domain Description: PBP2_MetR Location: 20850-21 438 bp Feature: gene Location: 21489-21977 bp Ori: PIL46532.1 Feature: domain Description: YbaK_EbsC Location: 21519-21966 bp Feature: domain Description: YbaK_EbsC Location: 21 51 9-21 966 bp Feature: gene Location: 22093-23796 bp Ori: PIL46054.1 Gene: ltrA Feature: domain Description: RVT_N Location: 22153-22396 bp Feature: domain Description: RVT_N Location: 221 53-22396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22441-23089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22441 -23089 bp Feature: domain Description: GIIM Note: maturase Location: 23140-23374 bp Feature: domain Description: GIIM Note: maturase Location: 231 40-23374 bp Feature: domain Description: HNHc Note: nucleases Location: 23599-23758 bp Feature: domain Description: HNHc Note: nucleases Location: 23599-23758 bp Feature: gene Location: 24873-25847 bp Ori: PIL46533.1 Feature: domain Description: COG2374 Location: 24885-25047 bp Feature: domain Description: COG2374 Location: 24885-25047 bp Feature: domain Description: COG2374 Location: 25308-25686 bp Feature: domain Description: COG2374 Location: 25308-25686 bp Feature: gene Location: 25828-28299 bp Ori: PIL46534.1 Feature: domain Description: sensory_box Location: 25930-26263 bp Feature: domain Description: sensory_box Location: 25930-26263 bp Feature: domain Description: PAS_9 Location: 26317-26629 bp Feature: domain Description: PAS_9 Location: 2631 7-26629 bp Feature: domain Description: PRK10060 Location: 26638-28258 bp Feature: domain Description: PRK1 0060 Location: 26638-28258 bp Feature: gene Location: 469378-470187 bp Ori: PIL46433.1 Feature: domain Description: DapB Location: 469387-470176 bp Feature: domain Description: DapB Location: 469387-4701 76 bp Feature: gene Location: 470201-470803 bp Ori: PIL46434.1 Feature: domain Description: BamE Location: 470408-470756 bp Feature: domain Description: BamE Location: 470408-470756 bp Feature: gene Location: 470928-472628 bp Ori: PIL46435.1 Gene: ltrA Feature: domain Description: RVT_N Location: 470985-471228 bp Feature: domain Description: RVT_N Location: 470985-471 228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 471273-471921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 471 273-471 921 bp Feature: domain Description: GIIM Note: maturase Location: 471972-472206 bp Feature: domain Description: GIIM Note: maturase Location: 471 972-472206 bp Feature: domain Description: HNH Note: nucleases Location: 472458-472590 bp Feature: domain Description: HNH Note: nucleases Location: 472458-472590 bp Feature: gene Location: 473818-474246 bp Ori: PIL46436.1 Feature: domain Description: fur Location: 473821-474238 bp Feature: domain Description: fur Location: 473821 -474238 bp Feature: gene Location: 474315-475331 bp Ori: PIL46437.1 Feature: domain Description: hrcA Location: 474321-475323 bp Feature: domain Description: hrcA Location: 474321 -475323 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_1 (pfam00126), PBP2_MetR (cd08441), YbaK_EbsC (TIGR00011), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), COG2374 (Predicted extracellular nuclease ), sensory_box (TIGR00229), PAS_9 (pfam13426)
PRK10060 (cyclic di-GMP phosphodiesterase), DapB (COG0289), BamE (COG2913), HNH (pfam01844), fur (PRK09462), hrcA (TIGR00331)

Seq: PDOC01000091.1 Massilia eurypsychrophila strain JCM 30074 ZB100091, whole genome shotgun sequence (563 bp)
Overview 1 RT 1: 1-472 bp Neighborhood of RT #1 [1, 471] RVT-GII Feature: gene Location: 1-471 bp Ori: PIL41865.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-472 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PDOC01000007.1 Massilia eurypsychrophila strain JCM 30074 ZB100006, whole genome shotgun sequence (245733 bp)
Overview 1 RT 1: 8-3575 bp Neighborhood of RT #1 [8, 3580] RVT-GII GIIM PMT_2 PRK03776 GtrA Feature: gene Location: 8-1024 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11-605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11-605 bp Feature: domain Description: GIIM Note: maturase Location: 662-866 bp Feature: domain Description: GIIM Note: maturase Location: 662-866 bp Feature: gene Location: 1128-3206 bp Ori: PIL44396.1 Feature: domain Description: PMT_2 Location: 1329-1749 bp Feature: domain Description: PMT_2 Location: 13 29-1749 bp Feature: domain Description: PRK03776 Location: 2850-3195 bp Feature: domain Description: PRK03 776 Location: 2850-3 195 bp Feature: gene Location: 3203-3580 bp Ori: PIL44397.1 Feature: domain Description: GtrA Location: 3245-3575 bp Feature: domain Description: GtrA Location: 3 245-3 575 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PMT_2 (pfam13231), PRK03776 (phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase), GtrA (pfam04138)

Seq: PDOC01000102.1 Massilia eurypsychrophila strain JCM 30074 ZB100102, whole genome shotgun sequence (432 bp)
Overview 1 RT 1: 4-118 bp Neighborhood of RT #1 [4, 432] RVT-GII Feature: gene Location: 4-432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-118 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PDOC01000024.1 Massilia eurypsychrophila strain JCM 30074 ZB100023, whole genome shotgun sequence (65062 bp)
Overview 1 RT 1: 57572-60901 bp Neighborhood of RT #1 [57572, 60918] RVT-GII rimI CheY Feature: gene Location: 57572-57802 bp Feature: gene Location: 58070-58310 bp Feature: gene Location: 58424-59308 bp Ori: PIL42610.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58751-59186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 875 1-5 9186 bp Feature: gene Location: 59412-60056 bp Ori: PIL42602.1 Feature: domain Description: rimI Location: 59649-59940 bp Feature: domain Description: rimI Location: 5 9649-5 9940 bp Feature: gene Location: 60082-60918 bp Ori: PIL42603.1 Feature: domain Description: CheY Location: 60550-60901 bp Feature: domain Description: CheY Location: 605 5 0-60901 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, rimI (TIGR01575), CheY (COG0784)