myRT

myRT report for GCA_002767765.1_ASM276776v1

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Seq: PEPJ01000056.1 Staphylococcus pseudintermedius strain 2101020035011 210102003501-1_18_length_42338_cov_100.278_ID_35, whole genome shotgun sequence (42338 bp)
Overview 1 RT 1: 37232-42172 bp Neighborhood of RT #1 [37232, 42336] PycA RVT-GII GIIM Feature: gene Location: 37232-40681 bp Feature: domain Description: PycA Location: 37238-40670 bp Feature: domain Description: PycA Location: 37238-40670 bp Feature: gene Location: 40906-41064 bp Feature: gene Location: 41233-42336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41266-41881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 266-41 881 bp Feature: domain Description: GIIM Note: maturase Location: 41941-42172 bp Feature: domain Description: GIIM Note: maturase Location: 41 941 -421 72 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: PEPJ01000009.1 Staphylococcus pseudintermedius strain 2101020035011 210102003501-1_1_length_381471_cov_74.177_ID_1, whole genome shotgun sequence (381471 bp)
Overview 1 RT 1: 3-2724 bp Neighborhood of RT #1 [3, 2768] RVT-GII GIIM INT_ICEBs1_C_like DUF1381 Feature: gene Location: 3-1106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36-651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36-651 bp Feature: domain Description: GIIM Note: maturase Location: 711-942 bp Feature: domain Description: GIIM Note: maturase Location: 711-942 bp Feature: gene Location: 1322-1948 bp Feature: domain Description: INT_ICEBs1_C_like Location: 1418-1943 bp Feature: domain Description: INT_ICEBs1_C_like Location: 1418-1943 bp Feature: gene Location: 2589-2768 bp Feature: domain Description: DUF1381 Location: 2598-2724 bp Feature: domain Description: DUF1381 Location: 2 598-2 72 4 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: PEPJ01000081.1 Staphylococcus pseudintermedius strain 2101020035011 210102003501-1_21_length_40038_cov_107.919_ID_41, whole genome shotgun sequence (40038 bp)
Overview 1 RT 1: 36892-39872 bp Neighborhood of RT #1 [36892, 40036] AraJ HmoA RVT-GII GIIM Feature: gene Location: 36892-38109 bp Feature: domain Description: AraJ Location: 36940-38083 bp Feature: domain Description: AraJ Location: 3 6940-3 8083 bp Feature: gene Location: 38353-38781 bp Feature: domain Description: HmoA Location: 38485-38707 bp Feature: domain Description: HmoA Location: 3 8485-3 8707 bp Feature: gene Location: 38933-40036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38966-39581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 8966-3 9581 bp Feature: domain Description: GIIM Note: maturase Location: 39641-39872 bp Feature: domain Description: GIIM Note: maturase Location: 3 9641-3 9872 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: PEPJ01000060.1 Staphylococcus pseudintermedius strain 2101020035011 210102003501-1_24_length_33172_cov_142.863_ID_47, whole genome shotgun sequence (33172 bp)
Overview 1 RT 1: 29462-32964 bp Neighborhood of RT #1 [29462, 33128] OafA SGNH_hydrolase_yrhL_like RVT-GII GIIM Feature: gene Location: 29462-31267 bp Feature: domain Description: OafA Location: 29483-30623 bp Feature: domain Description: OafA Location: 294 83-30623 bp Feature: domain Description: SGNH_hydrolase_yrhL_like Location: 30812-31244 bp Feature: domain Description: SGNH_hydrolase_yrhL_like Location: 30812-3124 4 bp Feature: gene Location: 31573-31731 bp Feature: gene Location: 31833-33128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32058-32673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32058-32673 bp Feature: domain Description: GIIM Note: maturase Location: 32733-32964 bp Feature: domain Description: GIIM Note: maturase Location: 32733-32964 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: PEPJ01000067.1 Staphylococcus pseudintermedius strain 2101020035011 210102003501-1_2_length_202364_cov_84.0874_ID_3, whole genome shotgun sequence (202364 bp)
Overview 1 RT 1: 200098-202198 bp Neighborhood of RT #1 [200098, 202362] UppP RVT-GII GIIM Feature: gene Location: 200098-200274 bp Feature: gene Location: 200288-201163 bp Feature: domain Description: UppP Location: 200318-201149 bp Feature: domain Description: UppP Location: 200318-201149 bp Feature: gene Location: 201259-202362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201292-201907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201292-201907 bp Feature: domain Description: GIIM Note: maturase Location: 201967-202198 bp Feature: domain Description: GIIM Note: maturase Location: 201967-202198 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: PEPJ01000022.1 Staphylococcus pseudintermedius strain 2101020035011 210102003501-1_31_length_11307_cov_185.159_ID_61, whole genome shotgun sequence (11307 bp)
Overview 1 RT 1: 9504-11141 bp Neighborhood of RT #1 [9504, 11305] RVT-GII GIIM Feature: gene Location: 9504-9686 bp Feature: gene Location: 9890-10075 bp Feature: gene Location: 10202-11305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10235-10850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10235-10850 bp Feature: domain Description: GIIM Note: maturase Location: 10910-11141 bp Feature: domain Description: GIIM Note: maturase Location: 10910-11141 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: PEPJ01000020.1 Staphylococcus pseudintermedius strain 2101020035011 210102003501-1_33_length_7052_cov_236.639_ID_65, whole genome shotgun sequence (7052 bp)
Overview 1 RT 1: 4022-6829 bp Neighborhood of RT #1 [4022, 6993] hemE HmoA RVT-GII GIIM Feature: gene Location: 4022-5080 bp Feature: domain Description: hemE Location: 4058-5072 bp Feature: domain Description: hemE Location: 4058-507 2 bp Feature: gene Location: 5340-5879 bp Feature: domain Description: HmoA Location: 5583-5802 bp Feature: domain Description: HmoA Location: 5583-5802 bp Feature: gene Location: 5947-6993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5950-6538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5950-6538 bp Feature: domain Description: GIIM Note: maturase Location: 6598-6829 bp Feature: domain Description: GIIM Note: maturase Location: 6598-6829 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: PEPJ01000054.1 Staphylococcus pseudintermedius strain 2101020035011 210102003501-1_34_length_5412_cov_279.558_ID_67, whole genome shotgun sequence (5412 bp)
Overview 1 RT 1: 2487-5246 bp Neighborhood of RT #1 [2487, 5410] CAT Rep_trans RVT-GII GIIM Feature: gene Location: 2487-3134 bp Feature: domain Description: CAT Location: 2496-3102 bp Feature: domain Description: CAT Location: 2496-3102 bp Feature: gene Location: 3264-4103 bp Feature: domain Description: Rep_trans Location: 3573-4014 bp Feature: domain Description: Rep_trans Location: 3573-4014 bp Feature: gene Location: 4307-5410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4340-4955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4340-4955 bp Feature: domain Description: GIIM Note: maturase Location: 5015-5246 bp Feature: domain Description: GIIM Note: maturase Location: 5015-5246 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: PEPJ01000065.1 Staphylococcus pseudintermedius strain 2101020035011 210102003501-1_4_length_155478_cov_84.1238_ID_7, whole genome shotgun sequence (155478 bp)
Overview 1 RT 1: 3-2784 bp Neighborhood of RT #1 [3, 2798] RVT-GII GIIM ABCF_EF-3 Feature: gene Location: 3-1043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36-651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36-651 bp Feature: domain Description: GIIM Note: maturase Location: 711-942 bp Feature: domain Description: GIIM Note: maturase Location: 711-9 42 bp Feature: gene Location: 2083-2250 bp Feature: gene Location: 2334-2798 bp Feature: domain Description: ABCF_EF-3 Location: 2340-2784 bp Feature: domain Description: ABCF_EF-3 Location: 2340-2784 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: PEPJ01000046.1 Staphylococcus pseudintermedius strain 2101020035011 210102003501-1_61_length_611_cov_1214.03_ID_121, whole genome shotgun sequence (611 bp)
Overview 1 RT 1: 3-594 bp Neighborhood of RT #1 [3, 608] RVT-GII Feature: gene Location: 3-608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-594 bp Sorry, your browser does not support inline SVG.
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