myRT

myRT report for GCA_002767985.1_ASM276798v1

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Seq: PEPO01000039.1 Staphylococcus pseudintermedius strain 2120308024011 212030802401-1_10_length_105179_cov_88.4665_ID_19, whole genome shotgun sequence (105179 bp)
Overview 1 RT 1: 102612-105179 bp Neighborhood of RT #1 [102612, 105178] FepD RVT-GII Feature: gene Location: 102612-103628 bp Feature: domain Description: FepD Location: 102648-103620 bp Feature: domain Description: FepD Location: 1 02648-1 03620 bp Feature: gene Location: 103771-104292 bp Feature: gene Location: 104843-105178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105068-105179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 05068-1 051 79 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FepD (COG0609), RVT-GII

Seq: PEPO01000010.1 Staphylococcus pseudintermedius strain 2120308024011 212030802401-1_11_length_94108_cov_87.6844_ID_21, whole genome shotgun sequence (94096 bp)
Overview 1 RT 1: 83017-85886 bp Neighborhood of RT #1 [83017, 85886] RVT-GII GIIM Feature: gene Location: 83017-83169 bp Feature: gene Location: 83190-83345 bp Feature: gene Location: 83447-84484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83672-84287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83672 -842 87 bp Feature: domain Description: GIIM Note: maturase Location: 84347-84461 bp Feature: domain Description: GIIM Note: maturase Location: 84347-84461 bp Feature: gene Location: 84563-84742 bp Feature: gene Location: 85719-85886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PEPO01000023.1 Staphylococcus pseudintermedius strain 2120308024011 212030802401-1_14_length_61864_cov_86.0843_ID_27, whole genome shotgun sequence (61864 bp)
Overview 1 RT 1: 2-2559 bp Neighborhood of RT #1 [2, 2567] RVT-GII PRK13673 MhpD Feature: gene Location: 2-337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227-338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227-3 3 8 bp Feature: gene Location: 937-1326 bp Feature: domain Description: PRK13673 Location: 949-1303 bp Feature: domain Description: PRK13 673 Location: 949-13 03 bp Feature: gene Location: 1662-2567 bp Feature: domain Description: MhpD Location: 1812-2559 bp Feature: domain Description: MhpD Location: 1812-2559 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MhpD (COG3971), RVT-GII, PRK13673 (hypothetical protein; Provisional)

Seq: PEPO01000025.1 Staphylococcus pseudintermedius strain 2120308024011 212030802401-1_15_length_43733_cov_84.4127_ID_29, whole genome shotgun sequence (43734 bp)
Overview 1 RT 1: 40915-43734 bp Neighborhood of RT #1 [40915, 43733] CcmA EcsB RVT-GII Feature: gene Location: 40915-41652 bp Feature: domain Description: CcmA Location: 40921-41593 bp Feature: domain Description: CcmA Location: 4 0921-4 1593 bp Feature: gene Location: 41745-42863 bp Feature: domain Description: EcsB Location: 41751-42798 bp Feature: domain Description: EcsB Location: 4 1751-4 2798 bp Feature: gene Location: 43398-43733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43623-43734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 3623-4 3734 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CcmA (COG4133), EcsB (pfam05975), RVT-GII

Seq: PEPO01000044.1 Staphylococcus pseudintermedius strain 2120308024011 212030802401-1_19_length_13936_cov_116.309_ID_37, whole genome shotgun sequence (13936 bp)
Overview 1 RT 1: 2-3331 bp Neighborhood of RT #1 [2, 3331] RVT-GII PRK00331 Feature: gene Location: 2-337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227-338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227-338 bp Feature: gene Location: 921-2765 bp Feature: domain Description: PRK00331 Location: 966-2763 bp Feature: domain Description: PRK00331 Location: 966-2763 bp Feature: gene Location: 3104-3331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PEPO01000034.1 Staphylococcus pseudintermedius strain 2120308024011 212030802401-1_20_length_13357_cov_140.21_ID_39, whole genome shotgun sequence (13357 bp)
Overview 1 RT 1: 2-3092 bp Neighborhood of RT #1 [2, 3100] RVT-GII fabF PRK09352 Feature: gene Location: 2-337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227-338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227-338 bp Feature: gene Location: 896-2146 bp Feature: domain Description: fabF Location: 917-2132 bp Feature: domain Description: fabF Location: 917-2132 bp Feature: gene Location: 2159-3100 bp Feature: domain Description: PRK09352 Location: 2162-3092 bp Feature: domain Description: PRK09352 Location: 216 2-3092 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09352 (beta-ketoacyl-ACP synthase 3), RVT-GII, fabF (TIGR03150)

Seq: PEPO01000029.1 Staphylococcus pseudintermedius strain 2120308024011 212030802401-1_26_length_2975_cov_252.151_ID_51, whole genome shotgun sequence (2975 bp)
Overview 1 RT 1: 271-2972 bp Neighborhood of RT #1 [271, 2974] NarK RVT-GII Feature: gene Location: 271-447 bp Feature: gene Location: 880-2058 bp Feature: domain Description: NarK Location: 895-2038 bp Feature: domain Description: NarK Location: 895-2038 bp Feature: gene Location: 2639-2974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2864-2972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2864-297 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, NarK (COG2223)

Seq: PEPO01000018.1 Staphylococcus pseudintermedius strain 2120308024011 212030802401-1_33_length_604_cov_838.089_ID_65, whole genome shotgun sequence (604 bp)
Overview 1 RT 1: 2-557 bp Neighborhood of RT #1 [2, 601] RVT-GII Feature: gene Location: 2-601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-557 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PEPO01000042.1 Staphylococcus pseudintermedius strain 2120308024011 212030802401-1_4_length_210082_cov_83.9512_ID_7, whole genome shotgun sequence (210081 bp)
Overview 1 RT 1: 207718-210081 bp Neighborhood of RT #1 [207718, 210080] COG2865 RVT-GII Feature: gene Location: 207718-208335 bp Feature: domain Description: COG2865 Location: 207724-208300 bp Feature: domain Description: COG2865 Location: 207724-208300 bp Feature: gene Location: 208762-208941 bp Feature: gene Location: 209745-210080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 209970-210081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 209 9 70-210081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT-GII

Seq: PEPO01000008.1 Staphylococcus pseudintermedius strain 2120308024011 212030802401-1_6_length_164117_cov_80.7162_ID_11, whole genome shotgun sequence (164117 bp)
Overview 1 RT 1: 2-2494 bp Neighborhood of RT #1 [2, 2499] RVT-GII FtsW YlaN Feature: gene Location: 2-337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227-338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227-338 bp Feature: gene Location: 921-2153 bp Feature: domain Description: FtsW Location: 960-2100 bp Feature: domain Description: FtsW Location: 960-210 0 bp Feature: gene Location: 2224-2499 bp Feature: domain Description: YlaN Location: 2230-2494 bp Feature: domain Description: YlaN Location: 2230-2494 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YlaN (COG4838), RVT-GII, FtsW (COG0772)

Seq: PEPO01000003.1 Staphylococcus pseudintermedius strain 2120308024011 212030802401-1_7_length_161583_cov_78.3036_ID_13, whole genome shotgun sequence (161583 bp)
Overview 1 RT 1: 2-1974 bp Neighborhood of RT #1 [2, 1982] RVT-GII PenP Feature: gene Location: 2-337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227-338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227-338 bp Feature: gene Location: 705-863 bp Feature: gene Location: 1095-1982 bp Feature: domain Description: PenP Location: 1149-1974 bp Feature: domain Description: PenP Location: 11 49-1974 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PenP (COG2367), RVT-GII