myRT

myRT report for GCA_002771715.1_ASM277171v1

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Seq: PCUM01000114.1 Zetaproteobacteria bacterium CG17_big_fil_post_rev_8_21_14_2_50_50_13 CG17_8_21_14_2.50_scaffold_91115_c, whole genome shotgun sequence (1150 bp)
Overview 1 RT 1: 374-953 bp Neighborhood of RT #1 [374, 1147] RVT-GII GIIM Feature: gene Location: 374-1147 bp Ori: PIQ30865.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 377-698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 377-698 bp Feature: domain Description: GIIM Note: maturase Location: 746-953 bp Feature: domain Description: GIIM Note: maturase Location: 746-953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PCUM01000058.1 Zetaproteobacteria bacterium CG17_big_fil_post_rev_8_21_14_2_50_50_13 CG17_8_21_14_2.50_scaffold_12600_c, whole genome shotgun sequence (9189 bp)
Overview 1 RT 1: 7419-8982 bp Neighborhood of RT #1 [7419, 9176] RVT-GII GIIM Feature: gene Location: 7419-7760 bp Feature: gene Location: 7872-8240 bp Feature: gene Location: 8364-9176 bp Ori: PIQ33376.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8367-8727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8367-872 7 bp Feature: domain Description: GIIM Note: maturase Location: 8772-8982 bp Feature: domain Description: GIIM Note: maturase Location: 8772 -8982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PCUM01000115.1 Zetaproteobacteria bacterium CG17_big_fil_post_rev_8_21_14_2_50_50_13 CG17_8_21_14_2.50_scaffold_598_c, whole genome shotgun sequence (29337 bp)
Overview 1 RT 1: 16140-29016 bp Neighborhood of RT #1 [16140, 29084] carB aspS RVT_N RVT-GII GIIM DUF4011 DEXXQc_SF1 DEXXQc_SF1 KOG1803 MTES_1575 Feature: gene Location: 16140-19373 bp Ori: PIQ30856.1 Gene: carB Feature: domain Description: carB Location: 16143-19359 bp Feature: domain Description: carB Location: 16143 -193 59 bp Feature: gene Location: 19524-21311 bp Ori: PIQ30857.1 Feature: domain Description: aspS Location: 19533-21291 bp Feature: domain Description: aspS Location: 1953 3 -21291 bp Feature: gene Location: 21532-22848 bp Ori: PIQ30860.1 Feature: domain Description: RVT_N Location: 21583-21826 bp Feature: domain Description: RVT_N Location: 21583 -21826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21871-22483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21871-22483 bp Feature: domain Description: GIIM Note: maturase Location: 22489-22603 bp Feature: domain Description: GIIM Note: maturase Location: 22489-22603 bp Feature: gene Location: 23820-29084 bp Ori: PIQ30858.1 Feature: domain Description: DUF4011 Location: 24996-25512 bp Feature: domain Description: DUF4011 Location: 24996-25512 bp Feature: domain Description: DEXXQc_SF1 Location: 25857-26238 bp Feature: domain Description: DEXXQc_SF1 Location: 25857-2623 8 bp Feature: domain Description: DEXXQc_SF1 Location: 27324-28059 bp Feature: domain Description: DEXXQc_SF1 Location: 273 24-28059 bp Feature: domain Description: KOG1803 Location: 28197-28584 bp Feature: domain Description: KOG1803 Location: 28197-28584 bp Feature: domain Description: MTES_1575 Location: 28737-29016 bp Feature: domain Description: MTES_1575 Location: 2873 7-29016 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT carB (PRK12815), aspS (PRK00476), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741)

Seq: PCUM01000019.1 Zetaproteobacteria bacterium CG17_big_fil_post_rev_8_21_14_2_50_50_13 CG17_8_21_14_2.50_scaffold_6541_c, whole genome shotgun sequence (6667 bp)
Overview 1 RT 1: 209-5985 bp Neighborhood of RT #1 [209, 6122] Mfd PRK10262 RVT-Retrons HTH_19 Feature: gene Location: 209-3541 bp Ori: PIQ34531.1 Gene: mfd Feature: domain Description: Mfd Location: 245-3536 bp Feature: domain Description: Mfd Location: 24 5-3536 bp Feature: gene Location: 3597-4532 bp Ori: PIQ34532.1 Gene: trxB Feature: domain Description: PRK10262 Location: 3600-4521 bp Feature: domain Description: PRK10262 Location: 3600-4 521 bp Feature: gene Location: 4919-5824 bp Ori: PIQ34533.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5084-5603 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5084 -5603 bp Feature: gene Location: 5802-6122 bp Ori: PIQ34534.1 Feature: domain Description: HTH_19 Location: 5814-5985 bp Feature: domain Description: HTH_19 Location: 5814 -5985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mfd (COG1197), PRK10262 (thioredoxin reductase; Provisional), RVT-Retrons, HTH_19 (pfam12844)

Seq: PCUM01000104.1 Zetaproteobacteria bacterium CG17_big_fil_post_rev_8_21_14_2_50_50_13 CG17_8_21_14_2.50_scaffold_688_c, whole genome shotgun sequence (40023 bp)
Overview 1 RT 1: 27834-32394 bp Neighborhood of RT #1 [27834, 32399] CRISPR_Cas2 CRISPR_Cas6 RVT-CRISPR Cas1_I-II-III DUF1887 Cas_csx3 Feature: gene Location: 27834-28205 bp Ori: PIQ31290.1 Gene: cas2 Feature: domain Description: CRISPR_Cas2 Location: 27942-28143 bp Feature: domain Description: CRISPR_Cas2 Location: 27942-28143 bp Feature: gene Location: 28109-31009 bp Ori: PIQ31291.1 Gene: cas1 Feature: domain Description: CRISPR_Cas6 Location: 28820-28979 bp Feature: domain Description: CRISPR_Cas6 Location: 28820-28979 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 29225-29819 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 29225 -29819 bp Feature: domain Description: Cas1_I-II-III Location: 30065-30950 bp Feature: domain Description: Cas1_I-II-III Location: 30065 -3095 0 bp Feature: gene Location: 30999-32147 bp Ori: PIQ31292.1 Feature: domain Description: DUF1887 Location: 31014-32079 bp Feature: domain Description: DUF1887 Location: 31014-32079 bp Feature: gene Location: 32154-32399 bp Ori: PIQ31303.1 Feature: domain Description: Cas_csx3 Location: 32262-32394 bp Feature: domain Description: Cas_csx3 Location: 32262-32394 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CRISPR_Cas2 (pfam09827), CRISPR_Cas6 (pfam10040), RVT-CRISPR, Cas1_I-II-III (cl00656), DUF1887 (pfam09002), Cas_csx3 (pfam09620)