myRT

myRT report for GCA_002775265.1_ASM277526v1

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Seq: NIFL01000016.1 Klebsiella pneumoniae strain AUH-KIMP195 NODE_16_length_151779_cov_32.2451_ID_2838, whole genome shotgun sequence (151779 bp)
Overview 1 RT 1: 32024-38877 bp Neighborhood of RT #1 [32024, 38894] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 32024-32689 bp Feature: domain Description: INT_P4_C Location: 32129-32687 bp Feature: domain Description: INT_P4_C Location: 321 29-32687 bp Feature: gene Location: 32950-33390 bp Feature: domain Description: Integrase_1 Location: 32956-33172 bp Feature: domain Description: Integrase_1 Location: 32956-331 72 bp Feature: gene Location: 33447-35525 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 33855-34299 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 33855-34299 bp Feature: gene Location: 35525-38134 bp Feature: domain Description: FimD Location: 35582-38123 bp Feature: domain Description: FimD Location: 35582-381 23 bp Feature: gene Location: 38166-38894 bp Feature: domain Description: FimC Location: 38214-38877 bp Feature: domain Description: FimC Location: 3821 4-38877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: NIFL01000023.1 Klebsiella pneumoniae strain AUH-KIMP195 NODE_23_length_79776_cov_58.204_ID_2852, whole genome shotgun sequence (79776 bp)
Overview 1 RT 1: 7642-10850 bp Neighborhood of RT #1 [7642, 10850] PRK10276 RVT-GII Feature: gene Location: 7642-8067 bp Feature: domain Description: PRK10276 Location: 7645-8053 bp Feature: domain Description: PRK102 76 Location: 7645-8053 bp Feature: gene Location: 8185-8418 bp Feature: gene Location: 8469-10004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8874-9612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8874-9612 bp Feature: gene Location: 9890-10468 bp Feature: gene Location: 10527-10850 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: NIFL01000029.1 Klebsiella pneumoniae strain AUH-KIMP195 NODE_29_length_25281_cov_60.3609_ID_2864, whole genome shotgun sequence (25281 bp)
Overview 1 RT 1: 10472-15497 bp Neighborhood of RT #1 [10472, 15502] umuC PRK10276 RVT-GII ArdC Feature: gene Location: 10472-11743 bp Feature: domain Description: umuC Location: 10475-11735 bp Feature: domain Description: umuC Location: 10475-1173 5 bp Feature: gene Location: 11743-12426 bp Feature: domain Description: PRK10276 Location: 12046-12409 bp Feature: domain Description: PRK10276 Location: 12046-12409 bp Feature: gene Location: 12580-14067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12985-13675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12985-13 675 bp Feature: gene Location: 14136-14405 bp Feature: gene Location: 14537-15502 bp Feature: domain Description: ArdC Location: 14663-15497 bp Feature: domain Description: ArdC Location: 14663 -15497 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, ArdC (COG4227)

Seq: NIFL01000048.1 Klebsiella pneumoniae strain AUH-KIMP195 NODE_48_length_3085_cov_194.628_ID_2902, whole genome shotgun sequence (3085 bp)
Overview 1 RT 1: 2-2628 bp Neighborhood of RT #1 [2, 2873] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 2-277 bp Feature: domain Description: InsE Location: 11-263 bp Feature: domain Description: InsE Location: 11-263 bp Feature: gene Location: 333-758 bp Feature: domain Description: PHA02517 Location: 357-693 bp Feature: domain Description: PHA02517 Location: 357-693 bp Feature: gene Location: 1350-2873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1623-2355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1623-2355 bp Feature: domain Description: GIIM Note: maturase Location: 2430-2628 bp Feature: domain Description: GIIM Note: maturase Location: 24 30-2628 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)