myRT

myRT report for GCA_002775295.1_ASM277529v1

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Seq: NIFM01000016.1 Klebsiella pneumoniae strain AUH-KIMP196 NODE_16_length_151779_cov_51.5771_ID_2367, whole genome shotgun sequence (151779 bp)
Overview 1 RT 1: 112886-119754 bp Neighborhood of RT #1 [112886, 119756] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 112886-113614 bp Feature: domain Description: FimC Location: 112934-113597 bp Feature: domain Description: FimC Location: 1 1 2934-1 1 3597 bp Feature: gene Location: 113646-116255 bp Feature: domain Description: FimD Location: 113703-116244 bp Feature: domain Description: FimD Location: 1 1 3703-1 1 6244 bp Feature: gene Location: 116255-118333 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 116663-117107 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 1 6663-1 1 71 07 bp Feature: gene Location: 118390-118830 bp Feature: domain Description: Integrase_1 Location: 118396-118612 bp Feature: domain Description: Integrase_1 Location: 1 1 8396-1 1 861 2 bp Feature: gene Location: 119091-119756 bp Feature: domain Description: INT_P4_C Location: 119196-119754 bp Feature: domain Description: INT_P4_C Location: 1 1 91 96-1 1 9754 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: NIFM01000024.1 Klebsiella pneumoniae strain AUH-KIMP196 NODE_24_length_79776_cov_94.6529_ID_2383, whole genome shotgun sequence (79776 bp)
Overview 1 RT 1: 7642-10850 bp Neighborhood of RT #1 [7642, 10850] PRK10276 RVT-GII Feature: gene Location: 7642-8067 bp Feature: domain Description: PRK10276 Location: 7645-8053 bp Feature: domain Description: PRK102 76 Location: 7645-8053 bp Feature: gene Location: 8185-8418 bp Feature: gene Location: 8469-10004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8874-9612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8874-9612 bp Feature: gene Location: 9890-10468 bp Feature: gene Location: 10527-10850 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: NIFM01000026.1 Klebsiella pneumoniae strain AUH-KIMP196 NODE_26_length_43888_cov_128.691_ID_2387, whole genome shotgun sequence (43888 bp)
Overview 1 RT 1: 28387-33409 bp Neighborhood of RT #1 [28387, 33417] ArdC RVT-GII PRK10276 umuC Feature: gene Location: 28387-29352 bp Feature: domain Description: ArdC Location: 28513-29347 bp Feature: domain Description: ArdC Location: 28513 -293 47 bp Feature: gene Location: 29484-29753 bp Feature: gene Location: 29822-31309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30227-30917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 0227-3 0917 bp Feature: gene Location: 31463-32146 bp Feature: domain Description: PRK10276 Location: 31766-32129 bp Feature: domain Description: PRK10276 Location: 3 1766-3 2129 bp Feature: gene Location: 32146-33417 bp Feature: domain Description: umuC Location: 32149-33409 bp Feature: domain Description: umuC Location: 3 2149-3 3 409 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: NIFM01000038.1 Klebsiella pneumoniae strain AUH-KIMP196 NODE_38_length_3005_cov_229.237_ID_2411, whole genome shotgun sequence (3005 bp)
Overview 1 RT 1: 1-2660 bp Neighborhood of RT #1 [1, 2660] RVT-GII GIIM Feature: gene Location: 1-126 bp Feature: gene Location: 213-1736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 486-1218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 86-1218 bp Feature: domain Description: GIIM Note: maturase Location: 1293-1491 bp Feature: domain Description: GIIM Note: maturase Location: 1293-14 91 bp Feature: gene Location: 2030-2467 bp Feature: gene Location: 2454-2660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)