myRT

myRT report for GCA_002776375.1_ASM277637v1

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Seq: NWBY01000002.1 Klebsiella pneumoniae strain AUH_IMP216 NODE_2_length_358997_cov_11.1506_ID_3470, whole genome shotgun sequence (358997 bp)
Overview 1 RT 1: 31991-38844 bp 2 RT 2: 160950-165266 bp Neighborhood of RT #1 [31991, 38861] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Neighborhood of RT #2 [160950, 165457] RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 31991-32656 bp Feature: domain Description: INT_P4_C Location: 32096-32654 bp Feature: domain Description: INT_P4_C Location: 32096-32654 bp Feature: gene Location: 32917-33357 bp Feature: domain Description: Integrase_1 Location: 32923-33139 bp Feature: domain Description: Integrase_1 Location: 32923-331 39 bp Feature: gene Location: 33414-35492 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 33822-34266 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 33822-34266 bp Feature: gene Location: 35492-38101 bp Feature: domain Description: FimD Location: 35549-38090 bp Feature: domain Description: FimD Location: 35549-38090 bp Feature: gene Location: 38133-38861 bp Feature: domain Description: FimC Location: 38181-38844 bp Feature: domain Description: FimC Location: 381 81 -38844 bp Feature: gene Location: 160950-161093 bp Feature: gene Location: 161370-161528 bp Feature: gene Location: 162223-163155 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 162325-162922 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 62325-1 62922 bp Feature: gene Location: 163152-164807 bp Feature: domain Description: COG3950 Location: 163353-164775 bp Feature: domain Description: COG3950 Location: 1 63353-1 64775 bp Feature: gene Location: 164810-165457 bp Feature: domain Description: TIGR02646 Location: 164879-165266 bp Feature: domain Description: TIGR02646 Location: 1 64879-1 65266 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: NWBY01000054.1 Klebsiella pneumoniae strain AUH_IMP216 NODE_54_length_1914_cov_160.314_ID_3574, whole genome shotgun sequence (1914 bp)
Overview 1 RT 1: 2-1463 bp Neighborhood of RT #1 [2, 1855] RVT-GII Feature: gene Location: 2-214 bp Feature: gene Location: 368-1855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773-1463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773-1463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII