myRT

myRT report for GCA_002777855.1_ASM277785v1

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Seq: MEIK01000015.1 Snodgrassella alvi strain wkB298 1196083.69_ctg7180000001322, whole genome shotgun sequence (300195 bp)
Overview 1 RT 1: 136298-139654 bp Neighborhood of RT #1 [136298, 139654] RhsA RVT-UG2 HisM Feature: gene Location: 136298-137005 bp Feature: domain Description: RhsA Location: 136391-136730 bp Feature: domain Description: RhsA Location: 1 36391 -1 36730 bp Feature: gene Location: 137202-137690 bp Feature: gene Location: 138017-138703 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 138041-138371 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1 38041 -1 38371 bp Feature: gene Location: 138784-139533 bp Feature: domain Description: HisM Location: 138808-139519 bp Feature: domain Description: HisM Location: 1 38808-1 3951 9 bp Feature: gene Location: 139511-139654 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RhsA (COG3209), RVT-UG2, HisM (COG0765)

Seq: MEIK01000017.1 Snodgrassella alvi strain wkB298 1196083.69_ctg7180000001324, whole genome shotgun sequence (78926 bp)
Overview 1 RT 1: 18777-24936 bp Neighborhood of RT #1 [18777, 24936] PRK04325 TenA RVT-UG3 RVT-UG8 Feature: gene Location: 18777-19013 bp Feature: domain Description: PRK04325 Location: 18810-19011 bp Feature: domain Description: PRK0432 5 Location: 18810-19011 bp Feature: gene Location: 19711-20373 bp Feature: domain Description: TenA Location: 19717-20365 bp Feature: domain Description: TenA Location: 19717-2 0365 bp Feature: gene Location: 20617-21885 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 20902-21403 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2 0902 -2 1403 bp Feature: gene Location: 21892-23889 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 22405-22843 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2 2 405-2 2 843 bp Feature: gene Location: 24457-24774 bp Feature: gene Location: 24790-24936 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK04325 (hypothetical protein; Provisional), TenA (COG0819), RVT-UG3, RVT-UG8

Seq: MEIK01000034.1 Snodgrassella alvi strain wkB298 1196083.69_ctg7180000001342, whole genome shotgun sequence (569578 bp)
Overview 1 RT 1: 401401-405509 bp Neighborhood of RT #1 [401401, 405511] PRK13863 RVT-UG7 KOG1970 DUF3761 Feature: gene Location: 401401-401949 bp Feature: domain Description: PRK13863 Location: 401599-401938 bp Feature: domain Description: PRK13 863 Location: 401599-40193 8 bp Feature: gene Location: 402016-402429 bp Feature: gene Location: 402592-404232 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 403030-403441 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 403 03 0-403 441 bp Feature: gene Location: 404229-404978 bp Feature: domain Description: KOG1970 Location: 404355-404709 bp Feature: domain Description: KOG1970 Location: 4043 55-404709 bp Feature: gene Location: 405308-405511 bp Feature: domain Description: DUF3761 Location: 405359-405509 bp Feature: domain Description: DUF3 761 Location: 4053 59-405509 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13863 (T-DNA border endonuclease VirD2), RVT-UG7, KOG1970 (KOG1970, Checkpoint RAD17-RFC complex, RAD17/RAD24 component ), DUF3761 (pfam12587)

Seq: MEIK01000040.1 Snodgrassella alvi strain wkB298 1196083.69_jtg7180000001190f_7180000001346f, whole genome shotgun sequence (341088 bp)
Overview 1 RT 1: 187914-194626 bp Neighborhood of RT #1 [187914, 194631] TIGR02646 COG3950 RVT-Retrons PRK13506 PRK03343 Feature: gene Location: 187914-188549 bp Feature: domain Description: TIGR02646 Location: 187983-188403 bp Feature: domain Description: TIGR0264 6 Location: 187983-1884 03 bp Feature: gene Location: 188564-190195 bp Feature: domain Description: COG3950 Location: 188792-190187 bp Feature: domain Description: COG3950 Location: 188792-190187 bp Feature: gene Location: 190198-191136 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 190300-190906 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 190300-190906 bp Feature: gene Location: 191609-193315 bp Feature: domain Description: PRK13506 Location: 191624-193310 bp Feature: domain Description: PRK13506 Location: 191624 -193310 bp Feature: gene Location: 193576-194631 bp Feature: domain Description: PRK03343 Location: 193585-194626 bp Feature: domain Description: PRK0334 3 Location: 193585-194 626 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, PRK13506 (formate--tetrahydrofolate ligase; Provisional), PRK03343 (transaldolase; Validated)