myRT

myRT report for GCA_002780495.1_ASM278049v1

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Seq: PDEO01000001.1 Streptococcus pseudopneumoniae strain 5305 contig00001, whole genome shotgun sequence (170379 bp)
Overview 1 RT 1: 6480-15757 bp Neighborhood of RT #1 [6480, 15768] rexB_recomb INT_ICEBs1_C_like RVT-GII GIIM eno TIGR00045 Feature: gene Location: 6480-9779 bp Feature: domain Description: rexB_recomb Location: 6510-9732 bp Feature: domain Description: rexB_recomb Location: 651 0-9732 bp Feature: gene Location: 10325-10573 bp Feature: domain Description: INT_ICEBs1_C_like Location: 10343-10508 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 1 0343-1 0508 bp Feature: gene Location: 10670-11947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10874-11489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0874-1 1 489 bp Feature: domain Description: GIIM Note: maturase Location: 11543-11756 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 543-1 1 756 bp Feature: gene Location: 12743-14047 bp Feature: domain Description: eno Location: 12746-14039 bp Feature: domain Description: eno Location: 1 2746-1 4039 bp Feature: gene Location: 14653-15768 bp Feature: domain Description: TIGR00045 Location: 14659-15757 bp Feature: domain Description: TIGR00045 Location: 1 4659-1 5757 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_ICEBs1_C_like (cd01189), RVT-GII, GIIM (pfam08388), eno (TIGR01060), TIGR00045 (glycerate kinase)

Seq: PDEO01000005.1 Streptococcus pseudopneumoniae strain 5305 contig00005, whole genome shotgun sequence (75025 bp)
Overview 1 RT 1: 18788-22800 bp Neighborhood of RT #1 [18788, 22802] YqgV GIIM GIIM RVT-GII RVT-GII COG3942 CW_binding_1 CW_binding_1 CW_binding_1 CW_binding_1 COG4466 Feature: gene Location: 18788-19078 bp Feature: domain Description: YqgV Location: 18791-19070 bp Feature: domain Description: YqgV Location: 18791-19070 bp Feature: gene Location: 19363-19644 bp Feature: domain Description: GIIM Note: maturase Location: 19369-19453 bp Feature: domain Description: GIIM Note: maturase Location: 19369-19453 bp Feature: domain Description: GIIM Note: maturase Location: 19495-19558 bp Feature: domain Description: GIIM Note: maturase Location: 19495-19558 bp Feature: gene Location: 19732-20235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19735-20146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19735-2 0146 bp Feature: gene Location: 20252-20554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20456-20543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0456-2 0543 bp Feature: gene Location: 21329-22447 bp Feature: domain Description: COG3942 Location: 21335-21983 bp Feature: domain Description: COG3942 Location: 2 1335-2 1983 bp Feature: domain Description: CW_binding_1 Location: 22160-22208 bp Feature: domain Description: CW_binding_1 Location: 2 2 160-2 2 2 08 bp Feature: domain Description: CW_binding_1 Location: 22217-22271 bp Feature: domain Description: CW_binding_1 Location: 2 2 2 17-2 2 2 71 bp Feature: domain Description: CW_binding_1 Location: 22277-22331 bp Feature: domain Description: CW_binding_1 Location: 2 2 2 77-2 2 331 bp Feature: domain Description: CW_binding_1 Location: 22337-22388 bp Feature: domain Description: CW_binding_1 Location: 2 2 337-2 2 388 bp Feature: gene Location: 22536-22802 bp Feature: domain Description: COG4466 Location: 22551-22800 bp Feature: domain Description: COG4466 Location: 2 2 551-2 2 800 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YqgV (COG0011), GIIM (pfam08388), RVT-GII, COG3942 (Surface antigen ), CW_binding_1 (pfam01473), COG4466 (Uncharacterized protein Veg, DUF1021 family )

Seq: PDEO01000007.1 Streptococcus pseudopneumoniae strain 5305 contig00007, whole genome shotgun sequence (65198 bp)
Overview 1 RT 1: 40931-45945 bp Neighborhood of RT #1 [40931, 45947] HTH_Tnp_4 DDE_Tnp_4 SLC6sbd_Tyt1-Like RVT-GII GIIM ManA ManA arb Feature: gene Location: 40931-41581 bp Feature: domain Description: HTH_Tnp_4 Location: 40994-41141 bp Feature: domain Description: HTH_Tnp_4 Location: 40994-41141 bp Feature: domain Description: DDE_Tnp_4 Location: 41189-41570 bp Feature: domain Description: DDE_Tnp_4 Location: 41189-41570 bp Feature: gene Location: 41752-42633 bp Feature: domain Description: SLC6sbd_Tyt1-Like Location: 41758-42625 bp Feature: domain Description: SLC6sbd_Tyt1-Like Location: 41758-42625 bp Feature: gene Location: 42698-43975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42902-43517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42902-43 517 bp Feature: domain Description: GIIM Note: maturase Location: 43571-43784 bp Feature: domain Description: GIIM Note: maturase Location: 43 571-43 784 bp Feature: gene Location: 44586-45584 bp Feature: domain Description: ManA Location: 44649-45039 bp Feature: domain Description: ManA Location: 44649-4503 9 bp Feature: domain Description: ManA Location: 45072-45582 bp Feature: domain Description: ManA Location: 45072-45582 bp Feature: gene Location: 45651-45947 bp Feature: domain Description: arb Location: 45654-45945 bp Feature: domain Description: arb Location: 45654-45945 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_4 (pfam13613), DDE_Tnp_4 (pfam13359), SLC6sbd_Tyt1-Like (cd10336), RVT-GII, GIIM (pfam08388), ManA (COG1482), arb (PRK09593)

Seq: PDEO01000008.1 Streptococcus pseudopneumoniae strain 5305 contig00008, whole genome shotgun sequence (60961 bp)
Overview 1 RT 1: 6633-10222 bp 2 RT 2: 26415-31220 bp Neighborhood of RT #1 [6633, 10263] DDE_3 RAYT RVT-GII GIIM QueFC Neighborhood of RT #2 [26415, 31246] SR_TndX_transposase PRK00106 RVT-GII RVT-GII YneF PRK00865 Feature: gene Location: 6633-7013 bp Feature: domain Description: DDE_3 Location: 6678-7011 bp Feature: domain Description: DDE_3 Location: 6678-7011 bp Feature: gene Location: 7232-7705 bp Feature: domain Description: RAYT Location: 7253-7631 bp Feature: domain Description: RAYT Location: 7253-7631 bp Feature: gene Location: 8228-9505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8432-9047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84 32-904 7 bp Feature: domain Description: GIIM Note: maturase Location: 9101-9314 bp Feature: domain Description: GIIM Note: maturase Location: 9101-9314 bp Feature: gene Location: 9608-9760 bp Feature: gene Location: 9772-10263 bp Feature: domain Description: QueFC Location: 9784-10222 bp Feature: domain Description: QueFC Location: 9784 -10222 bp Feature: gene Location: 26415-26558 bp Feature: domain Description: SR_TndX_transposase Location: 26418-26532 bp Feature: domain Description: SR_TndX_transposase Location: 264 18-26532 bp Feature: gene Location: 26683-28296 bp Feature: domain Description: PRK00106 Location: 26692-28294 bp Feature: domain Description: PRK00106 Location: 26692-28294 bp Feature: gene Location: 28999-29301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29203-29290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29203-29290 bp Feature: gene Location: 29318-29680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29321-29678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29321-29678 bp Feature: gene Location: 30001-30252 bp Feature: domain Description: YneF Location: 30007-30217 bp Feature: domain Description: YneF Location: 30007-30217 bp Feature: gene Location: 30452-31246 bp Feature: domain Description: PRK00865 Location: 30458-31220 bp Feature: domain Description: PRK00865 Location: 304 58-31220 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), RAYT (COG1943), RVT-GII, GIIM (pfam08388), QueFC (COG0780), SR_TndX_transposase (cd03770), PRK00106 (ribonuclease Y), YneF (COG3763), PRK00865 (glutamate racemase; Provisional)

Seq: PDEO01000032.1 Streptococcus pseudopneumoniae strain 5305 contig00032, whole genome shotgun sequence (24379 bp)
Overview 1 RT 1: 7619-13029 bp Neighborhood of RT #1 [7619, 13082] RMtype1_S_Sma198ORF994P-TRD2-CR2_like RMtype1_S_Sma198ORF994P-TRD2-CR2_like HsdM RVT-GII GIIM GIIM AlbA_2 Feature: gene Location: 7619-8725 bp Feature: domain Description: RMtype1_S_Sma198ORF994P-TRD2-CR2_like Location: 7676-8186 bp Feature: domain Description: RMtype1_S_Sma198ORF994P-TRD2-CR2_like Location: 7676-8186 bp Feature: domain Description: RMtype1_S_Sma198ORF994P-TRD2-CR2_like Location: 8588-8720 bp Feature: domain Description: RMtype1_S_Sma198ORF994P-TRD2-CR2_like Location: 85 88-8720 bp Feature: gene Location: 9043-10683 bp Feature: domain Description: HsdM Location: 9097-10606 bp Feature: domain Description: HsdM Location: 9097-10606 bp Feature: gene Location: 11362-12282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11566-12181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115 66-12181 bp Feature: gene Location: 12354-12635 bp Feature: domain Description: GIIM Note: maturase Location: 12360-12444 bp Feature: domain Description: GIIM Note: maturase Location: 12360-12444 bp Feature: domain Description: GIIM Note: maturase Location: 12486-12549 bp Feature: domain Description: GIIM Note: maturase Location: 12486-125 49 bp Feature: gene Location: 12849-13082 bp Feature: domain Description: AlbA_2 Location: 12888-13029 bp Feature: domain Description: AlbA_2 Location: 12888-13029 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), AlbA_2 (pfam04326), RMtype1_S_Sma198ORF994P-TRD2-CR2_like (cd17494), HsdM (COG0286)