myRT

myRT report for GCA_002780525.1_ASM278052v1

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Seq: PDEN01000009.1 Streptococcus pseudopneumoniae strain CipR71 contig00009, whole genome shotgun sequence (85961 bp)
Overview 1 RT 1: 29640-34372 bp Neighborhood of RT #1 [29640, 34374] TauC YqgV RVT-GII GIIM RVT-GII COG3942 CW_binding_1 CW_binding_1 CW_binding_1 CW_binding_1 COG4466 Feature: gene Location: 29640-30401 bp Feature: domain Description: TauC Location: 29649-30396 bp Feature: domain Description: TauC Location: 29649-30396 bp Feature: gene Location: 30361-30651 bp Feature: domain Description: YqgV Location: 30364-30646 bp Feature: domain Description: YqgV Location: 30364-30646 bp Feature: gene Location: 30947-31807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30950-31361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30950-31 361 bp Feature: domain Description: GIIM Note: maturase Location: 31415-31628 bp Feature: domain Description: GIIM Note: maturase Location: 31 41 5-31 628 bp Feature: gene Location: 31824-32126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32028-32115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32028-321 1 5 bp Feature: gene Location: 32901-34019 bp Feature: domain Description: COG3942 Location: 32907-33555 bp Feature: domain Description: COG3942 Location: 32907-33555 bp Feature: domain Description: CW_binding_1 Location: 33732-33780 bp Feature: domain Description: CW_binding_1 Location: 33732-33780 bp Feature: domain Description: CW_binding_1 Location: 33789-33843 bp Feature: domain Description: CW_binding_1 Location: 33789-33843 bp Feature: domain Description: CW_binding_1 Location: 33849-33903 bp Feature: domain Description: CW_binding_1 Location: 33849-33903 bp Feature: domain Description: CW_binding_1 Location: 33909-33960 bp Feature: domain Description: CW_binding_1 Location: 33909-33960 bp Feature: gene Location: 34108-34374 bp Feature: domain Description: COG4466 Location: 34123-34372 bp Feature: domain Description: COG4466 Location: 341 23-34372 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TauC (COG0600), YqgV (COG0011), RVT-GII, GIIM (pfam08388), COG3942 (Surface antigen ), CW_binding_1 (pfam01473), COG4466 (Uncharacterized protein Veg, DUF1021 family )

Seq: PDEN01000030.1 Streptococcus pseudopneumoniae strain CipR71 contig00030, whole genome shotgun sequence (24508 bp)
Overview 1 RT 1: 118-3462 bp Neighborhood of RT #1 [118, 3503] RVT-GII RVT-GII PRK00106 SR_TndX_transposase Feature: gene Location: 118-480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121-478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 1-478 bp Feature: gene Location: 497-799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 701-788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 701-788 bp Feature: gene Location: 1503-3116 bp Feature: domain Description: PRK00106 Location: 1512-3114 bp Feature: domain Description: PRK00106 Location: 1512 -3114 bp Feature: gene Location: 3168-3503 bp Feature: domain Description: SR_TndX_transposase Location: 3207-3462 bp Feature: domain Description: SR_TndX_transposase Location: 32 07-3462 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK00106 (ribonuclease Y), SR_TndX_transposase (cd03770)

Seq: PDEN01000037.1 Streptococcus pseudopneumoniae strain CipR71 contig00037, whole genome shotgun sequence (15807 bp)
Overview 1 RT 1: 6670-14397 bp Neighborhood of RT #1 [6670, 14397] rexB_recomb INT_ICEBs1_C_like RVT-GII GIIM eno Feature: gene Location: 6670-9969 bp Feature: domain Description: rexB_recomb Location: 6700-9922 bp Feature: domain Description: rexB_recomb Location: 6700-9922 bp Feature: gene Location: 10515-10763 bp Feature: domain Description: INT_ICEBs1_C_like Location: 10533-10698 bp Feature: domain Description: INT_ICEBs1_C_like Location: 1053 3 -10698 bp Feature: gene Location: 10847-12124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11051-11666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11051-11666 bp Feature: domain Description: GIIM Note: maturase Location: 11720-11933 bp Feature: domain Description: GIIM Note: maturase Location: 11720-1193 3 bp Feature: gene Location: 12800-14104 bp Feature: domain Description: eno Location: 12803-14096 bp Feature: domain Description: eno Location: 12803 -14096 bp Feature: gene Location: 14266-14397 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_ICEBs1_C_like (cd01189), RVT-GII, GIIM (pfam08388), eno (TIGR01060)

Seq: PDEN01000042.1 Streptococcus pseudopneumoniae strain CipR71 contig00042, whole genome shotgun sequence (10506 bp)
Overview 1 RT 1: 296-2391 bp Neighborhood of RT #1 [296, 2391] RVT-GII GIIM Feature: gene Location: 296-1573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 500-1115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 500-1115 bp Feature: domain Description: GIIM Note: maturase Location: 1169-1382 bp Feature: domain Description: GIIM Note: maturase Location: 1169-1382 bp Feature: gene Location: 1623-1919 bp Feature: gene Location: 2089-2391 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)