myRT

myRT report for GCA_002780895.1_ASM278089v1

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Seq: PEUB01000003.1 Nitrospirae bacterium CG02_land_8_20_14_3_00_41_53 CG02_land_8_20_14_3.00_150_scaffold_1463_c, whole genome shotgun sequence (23858 bp)
Overview 1 RT 1: 1637-4812 bp Neighborhood of RT #1 [1637, 4973] RVT-CRISPR RVT_1 Cas_Cas1 Cas2_I_II_III AbiEii Feature: gene Location: 1637-1816 bp Feature: gene Location: 1832-2479 bp Feature: gene Location: 2501-3523 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2819-2987 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 281 9-2987 bp Feature: domain Description: RVT_1 Location: 3014-3206 bp Feature: domain Description: RVT_1 Location: 301 4-3206 bp Feature: domain Description: Cas_Cas1 Location: 3236-3503 bp Feature: domain Description: Cas_Cas1 Location: 3236-3503 bp Feature: gene Location: 3492-3827 bp Feature: domain Description: Cas2_I_II_III Location: 3564-3786 bp Feature: domain Description: Cas2_I_II_III Location: 3564-3786 bp Feature: gene Location: 4323-4973 bp Feature: domain Description: AbiEii Location: 4383-4812 bp Feature: domain Description: AbiEii Location: 4383-481 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, RVT_1 (pfam00078), Cas_Cas1 (pfam01867), Cas2_I_II_III (cl11442), AbiEii (pfam08843)

Seq: PEUB01000083.1 Nitrospirae bacterium CG02_land_8_20_14_3_00_41_53 CG02_land_8_20_14_3.00_150_scaffold_1584_c, whole genome shotgun sequence (15720 bp)
Overview 1 RT 1: 10789-14186 bp Neighborhood of RT #1 [10789, 14215] dcd PRK00230 RVT-GII KOG4768 DUF2442 Feature: gene Location: 10789-11337 bp Feature: domain Description: dcd Location: 10792-11332 bp Feature: domain Description: dcd Location: 10792 -11332 bp Feature: gene Location: 11357-12091 bp Feature: domain Description: PRK00230 Location: 11387-12080 bp Feature: domain Description: PRK002 30 Location: 11387-12 080 bp Feature: gene Location: 12329-13372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12614-12917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 614-12 917 bp Feature: domain Description: KOG4768 Location: 13109-13196 bp Feature: domain Description: KOG4768 Location: 13109-13196 bp Feature: gene Location: 13655-13837 bp Feature: gene Location: 13943-14215 bp Feature: domain Description: DUF2442 Location: 13979-14186 bp Feature: domain Description: DUF2 442 Location: 13979-14186 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dcd (PRK00416), PRK00230 (orotidine-5'-phosphate decarboxylase), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), DUF2442 (pfam10387)

Seq: PEUB01000104.1 Nitrospirae bacterium CG02_land_8_20_14_3_00_41_53 CG02_land_8_20_14_3.00_150_scaffold_2163_c, whole genome shotgun sequence (27127 bp)
Overview 1 RT 1: 16064-23697 bp Neighborhood of RT #1 [16064, 23705] DUF433 COG0610 RVT-UG9 YtxH HflB Feature: gene Location: 16064-16291 bp Feature: domain Description: DUF433 Location: 16085-16250 bp Feature: domain Description: DUF43 3 Location: 16085-16250 bp Feature: gene Location: 16403-19222 bp Feature: domain Description: COG0610 Location: 16460-19160 bp Feature: domain Description: COG0610 Location: 16460-19160 bp Feature: gene Location: 19476-21074 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 19677-20283 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 19677-20283 bp Feature: gene Location: 21301-21648 bp Feature: domain Description: YtxH Location: 21340-21547 bp Feature: domain Description: YtxH Location: 213 40-21547 bp Feature: gene Location: 21807-23705 bp Feature: domain Description: HflB Location: 21900-23697 bp Feature: domain Description: HflB Location: 21900-23 697 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF433 (pfam04255), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RVT-UG9, YtxH (pfam12732), HflB (COG0465)