myRT

myRT report for GCA_002781245.1_ASM278124v1

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Seq: PEUJ01000042.1 Zetaproteobacteria bacterium CG02_land_8_20_14_3_00_50_9 CG02_land_8_20_14_3.00_150_scaffold_2717_c, whole genome shotgun sequence (12088 bp)
Overview 1 RT 1: 2-6295 bp Neighborhood of RT #1 [2, 6295] carB aspS RVT_N RVT-GII GIIM Feature: gene Location: 2-2143 bp Feature: domain Description: carB Location: 5-2144 bp Feature: domain Description: carB Location: 5-21 44 bp Feature: gene Location: 2294-4081 bp Feature: domain Description: aspS Location: 2303-4061 bp Feature: domain Description: aspS Location: 2303-4061 bp Feature: gene Location: 4302-5633 bp Feature: domain Description: RVT_N Location: 4368-4611 bp Feature: domain Description: RVT_N Location: 4368-461 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4656-5268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4656-5268 bp Feature: domain Description: GIIM Note: maturase Location: 5274-5388 bp Feature: domain Description: GIIM Note: maturase Location: 5274-5388 bp Feature: gene Location: 5693-6031 bp Feature: gene Location: 6044-6295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT carB (PRK12815), aspS (PRK00476), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PEUJ01000103.1 Zetaproteobacteria bacterium CG02_land_8_20_14_3_00_50_9 CG02_land_8_20_14_3.00_150_scaffold_4540_c, whole genome shotgun sequence (16605 bp)
Overview 1 RT 1: 4619-8083 bp Neighborhood of RT #1 [4619, 8083] RVT-CRISPR Cas1_I-II-III CRISPR_Cas2 Feature: gene Location: 4619-4837 bp Feature: gene Location: 4838-5149 bp Feature: gene Location: 5245-6927 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5251-5737 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 52 51-5737 bp Feature: domain Description: Cas1_I-II-III Location: 5983-6868 bp Feature: domain Description: Cas1_I-II-III Location: 5983-6868 bp Feature: gene Location: 6924-7202 bp Feature: domain Description: CRISPR_Cas2 Location: 6939-7143 bp Feature: domain Description: CRISPR_Cas2 Location: 6939-7143 bp Feature: gene Location: 7919-8083 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656), CRISPR_Cas2 (pfam09827)

Seq: PEUJ01000148.1 Zetaproteobacteria bacterium CG02_land_8_20_14_3_00_50_9 CG02_land_8_20_14_3.00_150_scaffold_9768_c, whole genome shotgun sequence (5908 bp)
Overview 1 RT 1: 206-2600 bp Neighborhood of RT #1 [206, 2737] PRK10262 RVT-Retrons HTH_19 Feature: gene Location: 206-1141 bp Feature: domain Description: PRK10262 Location: 209-1130 bp Feature: domain Description: PRK10262 Location: 209-113 0 bp Feature: gene Location: 1216-1344 bp Feature: gene Location: 1528-2433 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1693-2212 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1693 -2212 bp Feature: gene Location: 2055-2201 bp Feature: gene Location: 2411-2737 bp Feature: domain Description: HTH_19 Location: 2429-2600 bp Feature: domain Description: HTH_19 Location: 2429-2600 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10262 (thioredoxin reductase; Provisional), RVT-Retrons, HTH_19 (pfam12844)