myRT

myRT report for GCA_002782165.1_ASM278216v1

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Seq: PFHF01000134.1 Nitrospirae bacterium CG_4_8_14_3_um_filter_41_47 CG_4_8_14_3_um_filter_scaffold_1131_c, whole genome shotgun sequence (24049 bp)
Overview 1 RT 1: 1795-4970 bp Neighborhood of RT #1 [1795, 5131] RVT-CRISPR RVT_1 Cas_Cas1 Cas2_I_II_III AbiEii Feature: gene Location: 1795-1974 bp Feature: gene Location: 1990-2637 bp Feature: gene Location: 2659-3681 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2977-3145 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2977-31 45 bp Feature: domain Description: RVT_1 Location: 3172-3364 bp Feature: domain Description: RVT_1 Location: 31 72-3364 bp Feature: domain Description: Cas_Cas1 Location: 3394-3661 bp Feature: domain Description: Cas_Cas1 Location: 3394-3661 bp Feature: gene Location: 3650-3985 bp Feature: domain Description: Cas2_I_II_III Location: 3722-3944 bp Feature: domain Description: Cas2_I_II_III Location: 3722-3944 bp Feature: gene Location: 4481-5131 bp Feature: domain Description: AbiEii Location: 4541-4970 bp Feature: domain Description: AbiEii Location: 4541 -4970 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, RVT_1 (pfam00078), Cas_Cas1 (pfam01867), Cas2_I_II_III (cl11442), AbiEii (pfam08843)

Seq: PFHF01000112.1 Nitrospirae bacterium CG_4_8_14_3_um_filter_41_47 CG_4_8_14_3_um_filter_scaffold_1160_c, whole genome shotgun sequence (42393 bp)
Overview 1 RT 1: 37456-40853 bp Neighborhood of RT #1 [37456, 40882] dcd PRK00230 RVT-GII KOG4768 DUF2442 Feature: gene Location: 37456-38004 bp Feature: domain Description: dcd Location: 37459-37999 bp Feature: domain Description: dcd Location: 37459-37999 bp Feature: gene Location: 38024-38758 bp Feature: domain Description: PRK00230 Location: 38054-38747 bp Feature: domain Description: PRK002 30 Location: 38054-38747 bp Feature: gene Location: 38996-40039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39281-39584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 392 81-39584 bp Feature: domain Description: KOG4768 Location: 39776-39863 bp Feature: domain Description: KOG4768 Location: 39776-39863 bp Feature: gene Location: 40322-40504 bp Feature: gene Location: 40610-40882 bp Feature: domain Description: DUF2442 Location: 40646-40853 bp Feature: domain Description: DUF2 442 Location: 40646-40853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dcd (PRK00416), PRK00230 (orotidine-5'-phosphate decarboxylase), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), DUF2442 (pfam10387)

Seq: PFHF01000111.1 Nitrospirae bacterium CG_4_8_14_3_um_filter_41_47 CG_4_8_14_3_um_filter_scaffold_2286_c, whole genome shotgun sequence (31727 bp)
Overview 1 RT 1: 1070-5259 bp Neighborhood of RT #1 [1070, 5267] RVT-UG9 YtxH HflB Feature: gene Location: 1070-2668 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 1271-1877 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 1271-1877 bp Feature: gene Location: 2863-3210 bp Feature: domain Description: YtxH Location: 2902-3109 bp Feature: domain Description: YtxH Location: 2902-3 109 bp Feature: gene Location: 3369-5267 bp Feature: domain Description: HflB Location: 3462-5259 bp Feature: domain Description: HflB Location: 3 462-5259 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, YtxH (pfam12732), HflB (COG0465)