myRT

myRT report for GCA_002782845.1_ASM278284v1

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Seq: PFIW01000195.1 Actinobacteria bacterium CG_4_8_14_3_um_filter_50_135 CG_4_8_14_3_um_filter_scaffold_688_c, whole genome shotgun sequence (22441 bp)
Overview 1 RT 1: 17906-21657 bp Neighborhood of RT #1 [17906, 21830] COG4584 PRK09183 RVT-GII GIIM Feature: gene Location: 17906-19390 bp Feature: domain Description: COG4584 Location: 17909-18776 bp Feature: domain Description: COG4584 Location: 1 7909-1 8776 bp Feature: gene Location: 19392-20153 bp Feature: domain Description: PRK09183 Location: 19458-20115 bp Feature: domain Description: PRK091 83 Location: 1 9458-201 1 5 bp Feature: gene Location: 20220-21830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20772-21387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20772-21 387 bp Feature: domain Description: GIIM Note: maturase Location: 21441-21657 bp Feature: domain Description: GIIM Note: maturase Location: 21 441 -21 657 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), PRK09183 (transposase/IS protein; Provisional), RVT-GII, GIIM (pfam08388)

Seq: PFIW01000071.1 Actinobacteria bacterium CG_4_8_14_3_um_filter_50_135 CG_4_8_14_3_um_filter_scaffold_7961_c, whole genome shotgun sequence (5735 bp)
Overview 1 RT 1: 146-5280 bp Neighborhood of RT #1 [146, 5336] CRISPR_Cas6 Cas1_I-II-III RVT-CRISPR cas4 cas1_CYANO CRISPR_Cas2 Feature: gene Location: 146-1099 bp Feature: domain Description: CRISPR_Cas6 Location: 722-1088 bp Feature: domain Description: CRISPR_Cas6 Location: 72 2 -1088 bp Feature: gene Location: 1121-2128 bp Feature: domain Description: Cas1_I-II-III Location: 1133-2090 bp Feature: domain Description: Cas1_I-II-III Location: 1133-2 090 bp Feature: gene Location: 2305-4005 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2536-3139 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 536-3139 bp Feature: domain Description: cas4 Location: 3409-3943 bp Feature: domain Description: cas4 Location: 3409-3943 bp Feature: gene Location: 4066-5058 bp Feature: domain Description: cas1_CYANO Location: 4075-5053 bp Feature: domain Description: cas1_CYANO Location: 4075-5053 bp Feature: gene Location: 5064-5336 bp Feature: domain Description: CRISPR_Cas2 Location: 5067-5280 bp Feature: domain Description: CRISPR_Cas2 Location: 5067-52 80 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CRISPR_Cas6 (pfam10040), Cas1_I-II-III (cl00656), RVT-CRISPR, cas4 (TIGR00372), cas1_CYANO (TIGR04093), CRISPR_Cas2 (pfam09827)